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      Mineral surface chemistry control for origin of prebiotic peptides

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          Abstract

          Some seventy years ago, John Desmond Bernal proposed a role for clays in the origin of life. While much research has since been dedicated to the study of silicate clays, layered double hydroxides, believed to be common on the early Earth, have received only limited attention. Here we examine the role that layered hydroxides could have played in prebiotic peptide formation. We demonstrate how these minerals can concentrate, align and act as adsorption templates for amino acids, and during wetting—drying cycles, promote peptide bond formation. This enables us to propose a testable mechanism for the growth of peptides at layered double hydroxide interfaces in an early Earth environment. Our results provide insights into the potential role of mineral surfaces in mimicking aspects of biochemical reaction pathways.

          Abstract

          Clay is thought to have played a part in the origin of life. Here, the authors show that layered double hydroxides, a type of clay little studied despite its presumed prevalence on the early Earth, can facilitate the formation of small proteins.

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          Most cited references31

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          Hydrothermal vents and the origin of life.

          Submarine hydrothermal vents are geochemically reactive habitats that harbour rich microbial communities. There are striking parallels between the chemistry of the H(2)-CO(2) redox couple that is present in hydrothermal systems and the core energy metabolic reactions of some modern prokaryotic autotrophs. The biochemistry of these autotrophs might, in turn, harbour clues about the kinds of reactions that initiated the chemistry of life. Hydrothermal vents thus unite microbiology and geology to breathe new life into research into one of biology's most important questions - what is the origin of life?
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            Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

            At some stage in the origin of life, an informational polymer must have arisen by purely chemical means. According to one version of the 'RNA world' hypothesis this polymer was RNA, but attempts to provide experimental support for this have failed. In particular, although there has been some success demonstrating that 'activated' ribonucleotides can polymerize to form RNA, it is far from obvious how such ribonucleotides could have formed from their constituent parts (ribose and nucleobases). Ribose is difficult to form selectively, and the addition of nucleobases to ribose is inefficient in the case of purines and does not occur at all in the case of the canonical pyrimidines. Here we show that activated pyrimidine ribonucleotides can be formed in a short sequence that bypasses free ribose and the nucleobases, and instead proceeds through arabinose amino-oxazoline and anhydronucleoside intermediates. The starting materials for the synthesis-cyanamide, cyanoacetylene, glycolaldehyde, glyceraldehyde and inorganic phosphate-are plausible prebiotic feedstock molecules, and the conditions of the synthesis are consistent with potential early-Earth geochemical models. Although inorganic phosphate is only incorporated into the nucleotides at a late stage of the sequence, its presence from the start is essential as it controls three reactions in the earlier stages by acting as a general acid/base catalyst, a nucleophilic catalyst, a pH buffer and a chemical buffer. For prebiotic reaction sequences, our results highlight the importance of working with mixed chemical systems in which reactants for a particular reaction step can also control other steps.
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              Molecular Models of Hydroxide, Oxyhydroxide, and Clay Phases and the Development of a General Force Field

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                Author and article information

                Contributors
                valentina.erastova@durham.ac.uk
                chris.greenwell@durham.ac.uk
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                11 December 2017
                11 December 2017
                2017
                : 8
                : 2033
                Affiliations
                [1 ]ISNI 0000 0000 8700 0572, GRID grid.8250.f, Department of Chemistry, , Durham University, ; South Road, Durham, DH1 3LE UK
                [2 ]ISNI 0000 0004 1936 8948, GRID grid.4991.5, Department of Earth Sciences, , University of Oxford, ; South Parks Road, Oxford, OX1 3AN UK
                [3 ]ISNI 0000 0000 8700 0572, GRID grid.8250.f, Department of Earth Sciences, , Durham University, ; South Road, Durham, DH1 3LE UK
                Author information
                http://orcid.org/0000-0002-6747-3297
                http://orcid.org/0000-0003-4672-471X
                http://orcid.org/0000-0001-7916-7556
                http://orcid.org/0000-0001-5719-8415
                Article
                2248
                10.1038/s41467-017-02248-y
                5725419
                29229963
                a2398256-a14b-427f-930c-c0db4e178007
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 29 September 2017
                : 15 November 2017
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