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      Historical Isolation versus Recent Long-Distance Connections between Europe and Africa in Bifid Toadflaxes ( Linaria sect. Versicolores)

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      PLoS ONE
      Public Library of Science

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          Abstract

          Background

          Due to its complex, dynamic and well-known paleogeography, the Mediterranean region provides an ideal framework to study the colonization history of plant lineages. The genus Linaria has its diversity centre in the Mediterranean region, both in Europe and Africa. The last land connection between both continental plates occurred during the Messinian Salinity Crisis, in the late Miocene (5.96 to 5.33 Ma).

          Methodology/Principal Findings

          We analyzed the colonization history of Linaria sect. Versicolores (bifid toadflaxes), which includes c. 22 species distributed across the Mediterranean, including Europe and Africa. Two cpDNA regions ( rpl32- trnL UAG and trnK- matK) were sequenced from 66 samples of Linaria. We conducted phylogenetic, dating, biogeographic and phylogeographic analyses to reconstruct colonization patterns in space and time. Four major clades were found: two of them exclusively contain Iberian samples, while the other two include northern African samples together with some European samples. The bifid toadflaxes have been split in African and European clades since the late Miocene, and most lineage and speciation differentiation occurred during the Pliocene and Quaternary. We have strongly inferred four events of post-Messinian colonization following long-distance dispersal from northern Africa to the Iberian Peninsula, Sicily and Greece.

          Conclusions/Significance

          The current distribution of Linaria sect. Versicolores lineages is explained by both ancient isolation between African and European populations and recent events of long-distance dispersal over sea barriers. This result provides new evidence for the biogeographic complexity of the Mediterranean region.

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          Most cited references78

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          Dispersal-Vicariance Analysis: A New Approach to the Quantification of Historical Biogeography

          F Ronquist (1997)
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            A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation.

            We previously developed a cladistic approach to identify subsets of haplotypes defined by restriction endonuclease mapping or DNA sequencing that are associated with significant phenotypic deviations. Our approach was limited to segments of DNA in which little recombination occurs. In such cases, a cladogram can be constructed from the restriction site or sequence data that represents the evolutionary steps that interrelate the observed haplotypes. The cladogram is used to define a nested statistical design to identify mutational steps associated with significant phenotypic deviations. The central assumption behind this strategy is that any undetected mutation causing a phenotypic effect is embedded within the same evolutionary history that is represented by the cladogram. The power of this approach depends upon the confidence one has in the particular cladogram used to draw inferences. In this paper, we present a strategy for estimating the set of cladograms that are consistent with a particular sample of either restriction site or nucleotide sequence data and that includes the possibility of recombination. We first evaluate the limits of parsimony in constructing cladograms. Once these limits have been determined, we construct the set of parsimonious and nonparsimonious cladograms that is consistent with these limits. Our estimation procedure also identifies haplotypes that are candidates for being products of recombination. If recombination is extensive, our algorithm subdivides the DNA region into two or more subsections, each having little or no internal recombination. We apply this estimation procedure to three data sets to illustrate varying degrees of cladogram ambiguity and recombination.
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              Chronology, causes and progression of the Messinian salinity crisis

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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2011
                14 July 2011
                : 6
                : 7
                : e22234
                Affiliations
                [1]Real Jardín Botánico, CSIC, Madrid, Spain
                J. Craig Venter Institute, United States of America
                Author notes

                Conceived and designed the experiments: PV MFM. Performed the experiments: MFM. Analyzed the data: MFM PV. Wrote the paper: MFM PV.

                Article
                PONE-D-11-05528
                10.1371/journal.pone.0022234
                3136523
                21779399
                9f680422-7022-47e2-995e-3361c87c3cd9
                Fernández-Mazuecos, Vargas. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
                History
                : 29 March 2011
                : 17 June 2011
                Page count
                Pages: 15
                Categories
                Research Article
                Biology
                Computational Biology
                Population Genetics
                Haplotypes
                Ecology
                Biogeography
                Evolutionary Biology
                Evolutionary Systematics
                Molecular Systematics
                Phylogenetics
                Organismal Evolution
                Plant Evolution
                Population Genetics
                Haplotypes
                Genetics
                Population Genetics
                Haplotypes
                Plant Science
                Botany
                Plant Evolution
                Plant Phylogenetics
                Population Biology
                Population Genetics
                Haplotypes

                Uncategorized
                Uncategorized

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