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      Characteristics of the Fungal Communities and Co-occurrence Networks in Hazelnut Tree Root Endospheres and Rhizosphere Soil

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          Abstract

          Hazelnut has gained economic value in China in recent years, but its large-scale planting and research started later than other countries. Conducting basic research on hazelnut trees requires studying their related microorganisms. Here, we used high-throughput DNA sequencing to quantify the fungal communities in the root endospheres and rhizosphere soil of four hazelnut species. Fungal diversity in the rhizosphere soil was significantly higher than that in the root endospheres. Rhizosphere soil had more Mortierellomycota, and the fungal community compositions differed among the four hazelnut species. The root endospheres, especially those of the Ping’ou ( Corylus heterophylla × Corylus avellana) trees, contained more ectomycorrhizal fungi. The co-occurrence networks in the rhizosphere soil were more sophisticated and stable than those in the root endospheres, even when the root endospheres had higher modularity, because the structural differentiation of the root endospheres differed from that of the rhizosphere soil. Two-factor correlation network analysis and linear regression analysis showed that the total organic carbon was the main environmental factor affecting the fungal communities. Our study revealed the community compositions, functional predictions, and co-occurrence network structural characteristics of fungi in hazelnut root endospheres and rhizosphere soil. We also examined the potential keystone taxa, and analyzed the environmental factors of the dominant fungal community compositions. This study provides guidance for the growth of hazelnut and the management of hazelnut garden, and provides an insight for future development of fungal inoculants to be used in hazelnut root.

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          Most cited references78

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          The rhizosphere microbiome and plant health.

          The diversity of microbes associated with plant roots is enormous, in the order of tens of thousands of species. This complex plant-associated microbial community, also referred to as the second genome of the plant, is crucial for plant health. Recent advances in plant-microbe interactions research revealed that plants are able to shape their rhizosphere microbiome, as evidenced by the fact that different plant species host specific microbial communities when grown on the same soil. In this review, we discuss evidence that upon pathogen or insect attack, plants are able to recruit protective microorganisms, and enhance microbial activity to suppress pathogens in the rhizosphere. A comprehensive understanding of the mechanisms that govern selection and activity of microbial communities by plant roots will provide new opportunities to increase crop production. Copyright © 2012 Elsevier Ltd. All rights reserved.
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            Microbial interactions: from networks to models.

            Metagenomics and 16S pyrosequencing have enabled the study of ecosystem structure and dynamics to great depth and accuracy. Co-occurrence and correlation patterns found in these data sets are increasingly used for the prediction of species interactions in environments ranging from the oceans to the human microbiome. In addition, parallelized co-culture assays and combinatorial labelling experiments allow high-throughput discovery of cooperative and competitive relationships between species. In this Review, we describe how these techniques are opening the way towards global ecosystem network prediction and the development of ecosystem-wide dynamic models.
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              Embracing the unknown: disentangling the complexities of the soil microbiome

              Soil contains a vast diversity of microorganisms that can directly or indirectly modulate soil processes and terrestrial ecosystems. In this Review, Fierer summarizes the challenges in characterizing the composition and functions of the soil microbiome, and discusses key future research directions.
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                Author and article information

                Contributors
                Journal
                Front Plant Sci
                Front Plant Sci
                Front. Plant Sci.
                Frontiers in Plant Science
                Frontiers Media S.A.
                1664-462X
                08 December 2021
                2021
                : 12
                : 749871
                Affiliations
                [1] 1Key Laboratory Tree Breeding and Cultivation of the National Forestry and Grassland Administration/Research Institute of Forestry, Chinese Academy of Forestry , Beijing, China
                [2] 2State Key Laboratory of Tree Genetics and Breeding , Beijing, China
                [3] 3National Hazelnut Industry Innovation Alliance of National Forestry and Grassland Administration , Beijing, China
                [4] 4Hazelnut Engineering and Technical Research Center of National Forestry and Grassland Administration , Beijing, China
                Author notes

                Edited by: Valerio Cristofori, University of Tuscia, Italy

                Reviewed by: Marco Nuti, Sant’Anna School of Advanced Studies, Italy; Matthew Agler, Friedrich Schiller University Jena, Germany

                *Correspondence: Tiantian Zhao, zhaotian1984@ 123456163.com

                This article was submitted to Crop and Product Physiology, a section of the journal Frontiers in Plant Science

                Article
                10.3389/fpls.2021.749871
                8692873
                34956257
                9df7daa4-dfb9-4eed-a877-bd167559815d
                Copyright © 2021 Ma, Yang, Liang, Ma, Wang and Zhao.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 30 July 2021
                : 19 November 2021
                Page count
                Figures: 5, Tables: 0, Equations: 0, References: 78, Pages: 12, Words: 8230
                Categories
                Plant Science
                Original Research

                Plant science & Botany
                hazelnut,fungal community,co-occurrence network,roots,surrounding soil
                Plant science & Botany
                hazelnut, fungal community, co-occurrence network, roots, surrounding soil

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