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      Age and phenology control photosynthesis and leaf traits in the understory woody species, Rhamnus cathartica and Prunus serotina

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          Abstract

          Understory plants are often inadequately represented or neglected within analyses of forest ecosystem productivity. Further, the potential impacts of the biological factors of age class and growth form on carbon cycling physiology, and how it may vary across the growing season and amongst species of different native/non-native status, have not been thoroughly considered. Our study examines photosynthesis and associated physical leaf traits in two understory woody species, Rhamnus cathartica, introduced and invasive in North America, and Prunus serotina, a common subcanopy species native to North America. We estimated leaf-level photosynthesis as measured through light and carbon dioxide response curves, dark-adapted chlorophyll fluorescence and leaf traits (leaf mass per area and stomatal density) for each combination of species and age class at plots in the understory of a temperate deciduous research forest in the US Upper Midwest at two time points during the growing season, late spring (late May) and mid-summer (mid-July). Carbon assimilation rates from light response curves ( A sat, A 400) and fluorescence capacity estimate F v/ F m all increased between the two measurement points in both species and age class. Estimates of carbon reaction capacity ( V cmax and J max) exhibited a different directional response to seasonal development, declining in seedlings of both species and P. serotina trees (~8–37 % reduction in V cmax, ~9–34 % reduction in J max), though increased in trees of R. cathartica (+24 % in V cmax, +9 % in J max). Divergent responses in photosynthetic parameters amongst these factors may be explained by species differences in leaf mass per area and stomatal density, which together are likely influenced by both growth form, canopy position and ontogeny. Overall, we believe our findings suggest complex, varied influences on photosynthesis that indicate environmental and biological plasticity which may contribute to the historic and continued expansion of R. cathartica in the US Upper Midwest region.

          Abstract

          Shaded, understory leaves are often under-represented when considering forest productivity. Our study closely examines how two common understory woody species vary in photosynthesis and leaf traits through the growing season in a temperate forest, and how this relates to their age class and status as native and non-native, invasive species. We found varied responses that overall suggest competitive carbon gain and light use strategies of the invasive shrub, Rhamnus cathartica, which may help to explain its sustained dominance in the region.

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          Fitting Linear Mixed-Effects Models Usinglme4

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            A biochemical model of photosynthetic CO2 assimilation in leaves of C 3 species.

            Various aspects of the biochemistry of photosynthetic carbon assimilation in C3 plants are integrated into a form compatible with studies of gas exchange in leaves. These aspects include the kinetic properties of ribulose bisphosphate carboxylase-oxygenase; the requirements of the photosynthetic carbon reduction and photorespiratory carbon oxidation cycles for reduced pyridine nucleotides; the dependence of electron transport on photon flux and the presence of a temperature dependent upper limit to electron transport. The measurements of gas exchange with which the model outputs may be compared include those of the temperature and partial pressure of CO2(p(CO2)) dependencies of quantum yield, the variation of compensation point with temperature and partial pressure of O2(p(O2)), the dependence of net CO2 assimilation rate on p(CO2) and irradiance, and the influence of p(CO2) and irradiance on the temperature dependence of assimilation rate.
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              ImageJ2: ImageJ for the next generation of scientific image data

              Background ImageJ is an image analysis program extensively used in the biological sciences and beyond. Due to its ease of use, recordable macro language, and extensible plug-in architecture, ImageJ enjoys contributions from non-programmers, amateur programmers, and professional developers alike. Enabling such a diversity of contributors has resulted in a large community that spans the biological and physical sciences. However, a rapidly growing user base, diverging plugin suites, and technical limitations have revealed a clear need for a concerted software engineering effort to support emerging imaging paradigms, to ensure the software’s ability to handle the requirements of modern science. Results We rewrote the entire ImageJ codebase, engineering a redesigned plugin mechanism intended to facilitate extensibility at every level, with the goal of creating a more powerful tool that continues to serve the existing community while addressing a wider range of scientific requirements. This next-generation ImageJ, called “ImageJ2” in places where the distinction matters, provides a host of new functionality. It separates concerns, fully decoupling the data model from the user interface. It emphasizes integration with external applications to maximize interoperability. Its robust new plugin framework allows everything from image formats, to scripting languages, to visualization to be extended by the community. The redesigned data model supports arbitrarily large, N-dimensional datasets, which are increasingly common in modern image acquisition. Despite the scope of these changes, backwards compatibility is maintained such that this new functionality can be seamlessly integrated with the classic ImageJ interface, allowing users and developers to migrate to these new methods at their own pace. Conclusions Scientific imaging benefits from open-source programs that advance new method development and deployment to a diverse audience. ImageJ has continuously evolved with this idea in mind; however, new and emerging scientific requirements have posed corresponding challenges for ImageJ’s development. The described improvements provide a framework engineered for flexibility, intended to support these requirements as well as accommodate future needs. Future efforts will focus on implementing new algorithms in this framework and expanding collaborations with other popular scientific software suites. Electronic supplementary material The online version of this article (doi:10.1186/s12859-017-1934-z) contains supplementary material, which is available to authorized users.
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                Author and article information

                Contributors
                Role: Associate Editor
                Journal
                AoB Plants
                AoB Plants
                aobpla
                AoB Plants
                Oxford University Press (US )
                2041-2851
                November 2022
                30 September 2022
                30 September 2022
                : 14
                : 6
                : plac044
                Affiliations
                Department of Biology, Macalester College , Saint Paul, MN 55105, USA
                Department of Biology, Macalester College , Saint Paul, MN 55105, USA
                Department of Biology, Macalester College , Saint Paul, MN 55105, USA
                Department of Biology, Macalester College , Saint Paul, MN 55105, USA
                Department of Biology, Macalester College , Saint Paul, MN 55105, USA
                Department of Biology, Macalester College , Saint Paul, MN 55105, USA
                Department of Biology, Macalester College , Saint Paul, MN 55105, USA
                Department of Biology, Macalester College , Saint Paul, MN 55105, USA
                Author notes
                Corresponding author’s e-mail address: mheskel@ 123456macalester.edu
                Article
                plac044
                10.1093/aobpla/plac044
                9639396
                9d2d62e2-41b6-4349-81f3-c87eba84a696
                © The Author(s) 2022. Published by Oxford University Press on behalf of the Annals of Botany Company.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 29 March 2022
                : 23 September 2022
                : 06 September 2022
                : 07 November 2022
                Page count
                Pages: 12
                Categories
                Studies
                AcademicSubjects/SCI01210

                Plant science & Botany
                fluorescence,invasive species,non-native species,photosynthesis,seasonality,stomata,temperate forest,understory

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