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      The cytoplasmic PAS C domain of the sensor kinase DcuS of Escherichia coli: role in signal transduction, dimer formation, and DctA interaction

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          Abstract

          The cytoplasmic PAS C domain of the fumarate responsive sensor kinase DcuS of Escherichia coli links the transmembrane to the kinase domain. PAS C is also required for interaction with the transporter DctA serving as a cosensor of DcuS. Earlier studies suggested that PAS C functions as a hinge and transmits the signal to the kinase. Reorganizing the PAS C dimer interaction and, independently, removal of DctA, converts DcuS to the constitutive ON state (active without fumarate stimulation). ON mutants were categorized with respect to these two biophysical interactions and the functional state of DcuS: type I-ON mutations grossly reorganize the homodimer, and decrease interaction with DctA. Type IIA-ON mutations create the ON state without grossly reorganizing the homodimer, whereas interaction with DctA is decreased. The type IIB-ON mutations were neither in PAS C/PAS C , nor in DctA/DcuS interaction affected, similar to fumarate activated wild-typic DcuS. OFF mutations never affected dimer stability. The ON mutations provide novel mechanistic insight: PAS C dimerization is essential to silence the kinase. Reorganizing the homodimer and its interaction with DctA activate the kinase. The study suggests a novel ON homo-dimer conformation (type IIB) and an OFF conformation for PAS C. Type IIB-ON corresponds to the fumarate induced wild-type conformation, representing an interesting target for structural biology.

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          Most cited references37

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          Molecular Cloning : A Laboratory Manual

          <p>The first two editions of this manual have been mainstays of molecular biology for nearly twenty years, with an unrivalled reputation for reliability, accuracy, and clarity.<br>In this new edition, authors Joseph Sambrook and David Russell have completely updated the book, revising every protocol and adding a mass of new material, to broaden its scope and maintain its unbeatable value for studies in genetics, molecular cell biology, developmental biology, microbiology, neuroscience, and immunology.<br>Handsomely redesigned and presented in new bindings of proven durability, this three–volume work is essential for everyone using today’s biomolecular techniques.<br>The opening chapters describe essential techniques, some well–established, some new, that are used every day in the best laboratories for isolating, analyzing and cloning DNA molecules, both large and small.<br>These are followed by chapters on cDNA cloning and exon trapping, amplification of DNA, generation and use of nucleic acid probes, mutagenesis, and DNA sequencing.<br>The concluding chapters deal with methods to screen expression libraries, express cloned genes in both prokaryotes and eukaryotic cells, analyze transcripts and proteins, and detect protein–protein interactions.<br>The Appendix is a compendium of reagents, vectors, media, technical suppliers, kits, electronic resources and other essential information.<br>As in earlier editions, this is the only manual that explains how to achieve success in cloning and provides a wealth of information about why techniques work, how they were first developed, and how they have evolved. </p>
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            Two-component signal transduction.

            Most prokaryotic signal-transduction systems and a few eukaryotic pathways use phosphotransfer schemes involving two conserved components, a histidine protein kinase and a response regulator protein. The histidine protein kinase, which is regulated by environmental stimuli, autophosphorylates at a histidine residue, creating a high-energy phosphoryl group that is subsequently transferred to an aspartate residue in the response regulator protein. Phosphorylation induces a conformational change in the regulatory domain that results in activation of an associated domain that effects the response. The basic scheme is highly adaptable, and numerous variations have provided optimization within specific signaling systems. The domains of two-component proteins are modular and can be integrated into proteins and pathways in a variety of ways, but the core structures and activities are maintained. Thus detailed analyses of a relatively small number of representative proteins provide a foundation for understanding this large family of signaling proteins.
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              Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.

              Three kinds of improvements have been introduced into the M13-based cloning systems. (1) New Escherichia coli host strains have been constructed for the E. coli bacteriophage M13 and the high-copy-number pUC-plasmid cloning vectors. Mutations introduced into these strains improve cloning of unmodified DNA and of repetitive sequences. A new suppressorless strain facilitates the cloning of selected recombinants. (2) The complete nucleotide sequences of the M13mp and pUC vectors have been compiled from a number of sources, including the sequencing of selected segments. The M13mp18 sequence is revised to include the G-to-T substitution in its gene II at position 6 125 bp (in M13) or 6967 bp in M13mp18. (3) M13 clones suitable for sequencing have been obtained by a new method of generating unidirectional progressive deletions from the polycloning site using exonucleases HI and VII.
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                Author and article information

                Journal
                Microbiologyopen
                Microbiologyopen
                mbo3
                MicrobiologyOpen
                Blackwell Publishing Ltd
                2045-8827
                2045-8827
                December 2013
                09 September 2013
                : 2
                : 6
                : 912-927
                Affiliations
                [1 ]Institute for Microbiology and Wine Research, Johannes Gutenberg-University Mainz, Germany
                [2 ]Max-Planck-Institute for Biophysical Chemistry Göttingen, Germany
                Author notes
                Gottfried Unden, Institute for Microbiology and Wine Research, Johannes Gutenberg-University, Becherweg 15, 55099 Mainz, Germany. Tel: +49-6131-3923550; Fax: +49-6131-3922695; E-mail: unden@ 123456uni-mainz.de

                Funding Information This study was supported by Deutsche Forschungsgemeinschaft for financial support (UN 49/8-4, Gr1211/13-3).

                [a]

                Contributed equally to the work.

                Article
                10.1002/mbo3.127
                3892338
                24039243
                9d16381b-fe8d-478c-b6d5-18272981f149
                © 2013 Published by John Wiley & Sons Ltd

                Re-use of this article is permitted in accordance with the Creative Commons Deed, Attribution 2.5, which does not permit commercial exploitation.

                History
                : 23 July 2013
                : 31 July 2013
                Categories
                Original Research

                Microbiology & Virology
                fumarate,pas domain,dcta,dcus sensor kinase,signal transduction.
                Microbiology & Virology
                fumarate, pas domain, dcta, dcus sensor kinase, signal transduction.

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