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      Evaluation of the causal relationship between smoking and schizophrenia in East Asia

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          Abstract

          Cigarette smoking has been suggested to be associated with the risk of schizophrenia in observational studies. A significant causal effect of smoking on schizophrenia has been reported in European populations using the Mendelian randomization approach; however, no evidence of causality was found in participants from East Asia. Using Taiwan Biobank (TWBB), we conducted genome-wide association studies (GWAS) to identify susceptibility loci for smoking behaviors, including smoking initiation ( N = 79,989) and the onset age ( N = 15,582). We then meta-analyzed GWAS from TWBB and Biobank Japan (BBJ) with the total sample size of 245,425 for smoking initiation and 46,000 for onset age of smoking. The GWAS for schizophrenia was taken from the East Asia Psychiatric Genomics Consortium, which included 22,778 cases and 35,362 controls. We performed a two-sample Mendelian randomization to estimate the causality of smoking behaviors on schizophrenia in East Asia. In TWBB, we identified one locus that met genome-wide significance for onset age. In a meta-analysis of TWBB and BBJ, we identified two loci for smoking initiation. In Mendelian randomization, genetically predicted smoking initiation (odds ratio (OR) = 4.00, 95% confidence interval (CI) = 0.89–18.01, P = 0.071) and onset age (OR for a per-year increase = 0.96, 95% CI = 0.91–1.01, P = 0.098) were not significantly associated with schizophrenia; the direction of effect was consistent with European Ancestry samples, which had higher statistical power. These findings provide tentative evidence consistent with a causal role of smoking on the development of schizophrenia in East Asian populations.

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          Mendelian randomization with invalid instruments: effect estimation and bias detection through Egger regression

          Background: The number of Mendelian randomization analyses including large numbers of genetic variants is rapidly increasing. This is due to the proliferation of genome-wide association studies, and the desire to obtain more precise estimates of causal effects. However, some genetic variants may not be valid instrumental variables, in particular due to them having more than one proximal phenotypic correlate (pleiotropy). Methods: We view Mendelian randomization with multiple instruments as a meta-analysis, and show that bias caused by pleiotropy can be regarded as analogous to small study bias. Causal estimates using each instrument can be displayed visually by a funnel plot to assess potential asymmetry. Egger regression, a tool to detect small study bias in meta-analysis, can be adapted to test for bias from pleiotropy, and the slope coefficient from Egger regression provides an estimate of the causal effect. Under the assumption that the association of each genetic variant with the exposure is independent of the pleiotropic effect of the variant (not via the exposure), Egger’s test gives a valid test of the null causal hypothesis and a consistent causal effect estimate even when all the genetic variants are invalid instrumental variables. Results: We illustrate the use of this approach by re-analysing two published Mendelian randomization studies of the causal effect of height on lung function, and the causal effect of blood pressure on coronary artery disease risk. The conservative nature of this approach is illustrated with these examples. Conclusions: An adaption of Egger regression (which we call MR-Egger) can detect some violations of the standard instrumental variable assumptions, and provide an effect estimate which is not subject to these violations. The approach provides a sensitivity analysis for the robustness of the findings from a Mendelian randomization investigation.
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            Consistent Estimation in Mendelian Randomization with Some Invalid Instruments Using a Weighted Median Estimator

            ABSTRACT Developments in genome‐wide association studies and the increasing availability of summary genetic association data have made application of Mendelian randomization relatively straightforward. However, obtaining reliable results from a Mendelian randomization investigation remains problematic, as the conventional inverse‐variance weighted method only gives consistent estimates if all of the genetic variants in the analysis are valid instrumental variables. We present a novel weighted median estimator for combining data on multiple genetic variants into a single causal estimate. This estimator is consistent even when up to 50% of the information comes from invalid instrumental variables. In a simulation analysis, it is shown to have better finite‐sample Type 1 error rates than the inverse‐variance weighted method, and is complementary to the recently proposed MR‐Egger (Mendelian randomization‐Egger) regression method. In analyses of the causal effects of low‐density lipoprotein cholesterol and high‐density lipoprotein cholesterol on coronary artery disease risk, the inverse‐variance weighted method suggests a causal effect of both lipid fractions, whereas the weighted median and MR‐Egger regression methods suggest a null effect of high‐density lipoprotein cholesterol that corresponds with the experimental evidence. Both median‐based and MR‐Egger regression methods should be considered as sensitivity analyses for Mendelian randomization investigations with multiple genetic variants.
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              Detection of widespread horizontal pleiotropy in causal relationships inferred from Mendelian randomization between complex traits and diseases

              Horizontal pleiotropy occurs when the variant has an effect on disease outside of its effect on the exposure in Mendelian randomization (MR). Violation of the ‘no horizontal pleiotropy’ assumption can cause severe bias in MR. We developed the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) test to identify horizontal pleiotropic outliers in multi-instrument summary-level MR testing. We showed using simulations that MR-PRESSO is best suited when horizontal pleiotropy occurs in <50% of instruments. Next, we applied MR-PRESSO, along with several other MR tests to complex traits and diseases, and found that horizontal pleiotropy: (i) was detectable in over 48% of significant causal relationships in MR; (ii) introduced distortions in the causal estimates in MR that ranged on average from −131% to 201%; (iii) induced false positive causal relationships in up to 10% of relationships; and (iv) can be corrected in some but not all instances.
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                Author and article information

                Contributors
                wangsh@mail.cmu.edu.tw
                Journal
                Schizophrenia (Heidelb)
                Schizophrenia (Heidelb)
                Schizophrenia
                Nature Publishing Group UK (London )
                2754-6993
                9 September 2022
                9 September 2022
                2022
                : 8
                : 1
                : 72
                Affiliations
                [1 ]GRID grid.254145.3, ISNI 0000 0001 0083 6092, Department of Occupational Safety and Health, College of Public Health, , China Medical University, ; Taichung, Taiwan
                [2 ]GRID grid.254145.3, ISNI 0000 0001 0083 6092, Department of Public Health, College of Public Health, , China Medical University, ; Taichung, Taiwan
                [3 ]GRID grid.59784.37, ISNI 0000000406229172, Center for Neuropsychiatric Research, , National Health Research Institutes, ; Miaoli, Taiwan
                [4 ]GRID grid.417832.b, ISNI 0000 0004 0384 8146, Biogen, ; Cambridge, MA USA
                [5 ]GRID grid.66859.34, ISNI 0000 0004 0546 1623, Stanley Center for Psychiatric Research, , Broad Institute of MIT and Harvard, ; Cambridge, MA USA
                [6 ]GRID grid.19188.39, ISNI 0000 0004 0546 0241, Institute of Epidemiology and Preventive Medicine, College of Public Health, , National Taiwan University, ; Taipei, Taiwan
                Author information
                http://orcid.org/0000-0002-7198-4874
                http://orcid.org/0000-0002-8466-2698
                Article
                281
                10.1038/s41537-022-00281-5
                9463183
                36085329
                975f443b-c432-47ec-a102-1a31e3c34a93
                © The Author(s) 2022

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 25 April 2022
                : 29 August 2022
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100007300, China Medical University (CMU);
                Award ID: CMU110-MF-79
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100004737, National Health Research Institutes (NHRI);
                Award ID: NHRI-EX109-10931PI, NHRI-EX110-10931PI, NHRI-EX111-10931PI
                Award Recipient :
                Categories
                Article
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                © The Author(s) 2022

                schizophrenia,biomarkers
                schizophrenia, biomarkers

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