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      Multiplex Networks to Characterize Seizure Development in Traumatic Brain Injury Patients

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          Abstract

          Traumatic brain injury (TBI) may cause secondary debilitating problems, such as post-traumatic epilepsy (PTE), which occurs with unprovoked recurrent seizures, months or even years after TBI. Currently, the Epilepsy Bioinformatics Study for Antiepileptogenic Therapy (EpiBioS4Rx) has been enrolling moderate-severe TBI patients with the goal to identify biomarkers of epileptogenesis that may help to prevent seizure occurrence and better understand the mechanism underlying PTE. In this work, we used a novel complex network approach based on segmenting T1-weighted Magnetic Resonance Imaging (MRI) scans in patches of the same dimension (network nodes) and measured pairwise patch similarities using Pearson's correlation (network connections). This network model allowed us to obtain a series of single and multiplex network metrics to comprehensively analyze the different interactions between brain components and capture structural MRI alterations related to seizure development. We used these complex network features to train a Random Forest (RF) classifier and predict, with an accuracy of 70 and a 95% confidence interval of [67, 73%], which subjects from EpiBioS4Rx have had at least one seizure after a TBI. This complex network approach also allowed the identification of the most informative scales and brain areas for the discrimination between the two clinical groups: seizure-free and seizure-affected subjects, demonstrating to be a promising pilot study which, in the future, may serve to identify and validate biomarkers of PTE.

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          Most cited references37

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          FSL.

          FSL (the FMRIB Software Library) is a comprehensive library of analysis tools for functional, structural and diffusion MRI brain imaging data, written mainly by members of the Analysis Group, FMRIB, Oxford. For this NeuroImage special issue on "20 years of fMRI" we have been asked to write about the history, developments and current status of FSL. We also include some descriptions of parts of FSL that are not well covered in the existing literature. We hope that some of this content might be of interest to users of FSL, and also maybe to new research groups considering creating, releasing and supporting new software packages for brain image analysis. Copyright © 2011 Elsevier Inc. All rights reserved.
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            FreeSurfer is a suite of tools for the analysis of neuroimaging data that provides an array of algorithms to quantify the functional, connectional and structural properties of the human brain. It has evolved from a package primarily aimed at generating surface representations of the cerebral cortex into one that automatically creates models of most macroscopically visible structures in the human brain given any reasonable T1-weighted input image. It is freely available, runs on a wide variety of hardware and software platforms, and is open source. Copyright © 2012 Elsevier Inc. All rights reserved.
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                Author and article information

                Contributors
                Journal
                Front Neurosci
                Front Neurosci
                Front. Neurosci.
                Frontiers in Neuroscience
                Frontiers Media S.A.
                1662-4548
                1662-453X
                30 November 2020
                2020
                : 14
                : 591662
                Affiliations
                [1] 1Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California , Los Angeles, CA, United States
                [2] 2Dipartimento di Farmacia - Scienze del Farmaco, Università degli Studi di Bari “A. Moro” , Bari, Italy
                [3] 3Department of Psychology, University of California, Los Angeles , Los Angeles, CA, United States
                [4] 4David Geffen School of Medicine, University of California, Los Angeles , Los Angeles, CA, United States
                Author notes

                Edited by: Diana M. Sima, Icometrix, Belgium

                Reviewed by: Baxter P. Rogers, Vanderbilt University, United States; Pierre Besson, Northwestern University, United States

                *Correspondence: Marianna La Rocca marianna.larocca@ 123456loni.usc.edu

                This article was submitted to Brain Imaging Methods, a section of the journal Frontiers in Neuroscience

                Article
                10.3389/fnins.2020.591662
                7734183
                33328863
                971bf898-ea3a-472f-a201-e5927004a3dc
                Copyright © 2020 La Rocca, Garner, Amoroso, Lutkenhoff, Monti, Vespa, Toga and Duncan.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 05 August 2020
                : 09 November 2020
                Page count
                Figures: 7, Tables: 3, Equations: 5, References: 37, Pages: 11, Words: 7239
                Funding
                Funded by: National Institutes of Health 10.13039/100000002
                Award ID: U54 NS100064
                Categories
                Neuroscience
                Original Research

                Neurosciences
                post-traumatic epilepsy,traumatic brain injury,structural magnetic resonance imaging,multiplex networks,random forest,machine learning,complex networks

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