Quercetin is formulated in a super saturable - self-nano emulsifying (SS-SNE) to increase its stability and bioavailability. This study focuses on the screening design for SS-SNE components with a fractional factorial design (FrFD) approach and chemometric analysis. The FrFD method was chosen because it provides comprehensive benefits. The oil components used are canola and grape seed oil. Croduret 50-SS was selected as a surfactant and PEG 400 as a co-surfactant. The interaction of SNE components was evaluated using FTIR-ATR instrumentation. SNE droplet morphology was observed using a transmission electron microscope (TEM). The selected formulas were grape seed oil as oil phase at 19.6%, croduret at 60%, and PEG 400 as co-surfactant with a concentration of 16.6%. The selected formula has a droplet size of 133.27 nm, PDI of 0.181, the zeta potential of 17.00 mV, electrophoretic mobility of 1.332 µmcm/Vs, emulsification time of 10.05 seconds, a viscosity of 370.147 mPa.s, and a drug load of 31.70 mg/mL. The components of grape seed oil, croduret, and PEG 400 resulted in a quercetin carrier SNE formula that met the criteria. FrFD design and chemometric analysis in the screening process can help determine the selected formula very effectively and efficiently.