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      Clinical variability associated with intronic FGF14 GAA repeat expansion in Japan

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          Abstract

          Background and Objectives

          The GAA repeat expansion within the fibroblast growth factor 14 ( FGF14) gene has been found to be associated with late‐onset cerebellar ataxia. This study aimed to investigate the genetic causes of cerebellar ataxia in patients in Japan.

          Methods

          We collected a case series of 940 index patients who presented with chronic cerebellar ataxia and remained genetically undiagnosed after our preliminary genetic screening. To investigate the FGF14 repeat locus, we employed an integrated diagnostic strategy that involved fluorescence amplicon length analysis polymerase chain reaction (PCR), repeat‐primed PCR, and long‐read sequencing.

          Results

          Pathogenic FGF14 GAA repeat expansions were detected in 12 patients from 11 unrelated families. The median size of the pathogenic GAA repeat was 309 repeats (range: 270–316 repeats). In these patients, the mean age of onset was 66.9 ± 9.6 years, with episodic symptoms observed in 56% of patients and parkinsonism in 30% of patients. We also detected FGF14 repeat expansions in a patient with a phenotype of multiple system atrophy, including cerebellar ataxia, parkinsonism, autonomic ataxia, and bilateral vocal cord paralysis. Brain magnetic resonance imaging (MRI) showed normal to mild cerebellar atrophy, and a follow‐up study conducted after a mean period of 6 years did not reveal any significant progression.

          Discussion

          This study highlights the importance of FGF14 GAA repeat analysis in patients with late‐onset cerebellar ataxia, particularly when they exhibit episodic symptoms, or their brain MRI shows no apparent cerebellar atrophy. Our findings contribute to a better understanding of the clinical variability of GAA‐ FGF14‐related diseases.

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          Most cited references14

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          Biallelic expansion of an intronic repeat in RFC1 is a common cause of late-onset ataxia

          Late-onset ataxia is common, often idiopathic, and can result from cerebellar, proprioceptive, or vestibular impairment; when in combination, it is also termed cerebellar ataxia, neuropathy, vestibular areflexia syndrome (CANVAS). We used non-parametric linkage analysis and genome sequencing to identify a biallelic intronic AAGGG repeat expansion in the replication factor C subunit 1 (RFC1) gene as the cause of familial CANVAS and a frequent cause of late-onset ataxia, particularly if sensory neuronopathy and bilateral vestibular areflexia coexist. The expansion, which occurs in the poly(A) tail of an AluSx3 element and differs in both size and nucleotide sequence from the reference (AAAAG)11 allele, does not affect RFC1 expression in patient peripheral and brain tissue, suggesting no overt loss of function. These data, along with an expansion carrier frequency of 0.7% in Europeans, implies that biallelic AAGGG expansion in RFC1 is a frequent cause of late-onset ataxia.
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            Deep Intronic FGF14 GAA Repeat Expansion in Late-Onset Cerebellar Ataxia

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              Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads

              Tandemly repeated DNA is highly mutable and causes at least 31 diseases, but it is hard to detect pathogenic repeat expansions genome-wide. Here, we report robust detection of human repeat expansions from careful alignments of long but error-prone (PacBio and nanopore) reads to a reference genome. Our method is robust to systematic sequencing errors, inexact repeats with fuzzy boundaries, and low sequencing coverage. By comparing to healthy controls, we prioritize pathogenic expansions within the top 10 out of 700,000 tandem repeats in whole genome sequencing data. This may help to elucidate the many genetic diseases whose causes remain unknown. Electronic supplementary material The online version of this article (10.1186/s13059-019-1667-6) contains supplementary material, which is available to authorized users.
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                Author and article information

                Contributors
                thiroshi@m3.kufm.kagoshima-u.ac.jp
                Journal
                Ann Clin Transl Neurol
                Ann Clin Transl Neurol
                10.1002/(ISSN)2328-9503
                ACN3
                Annals of Clinical and Translational Neurology
                John Wiley and Sons Inc. (Hoboken )
                2328-9503
                02 November 2023
                January 2024
                : 11
                : 1 ( doiID: 10.1002/acn3.v11.1 )
                : 96-104
                Affiliations
                [ 1 ] Department of Neurology and Geriatrics Kagoshima University Graduate School of Medical and Dental Sciences Kagoshima Japan
                [ 2 ] Department of Neurology and Clinical Pharmacology Ehime University Hospital Toon Ehime Japan
                [ 3 ] Department of Neurology Oita Prefecture Hospital Oita Japan
                [ 4 ] Department of Neurology Ohashi Go Neurosurgical Neurology Clinic Fukuoka Japan
                [ 5 ] Department of Neurology National Hospital Organization Minamikyushu Hospital Kagoshima Japan
                [ 6 ] Department of Neurology Kagoshima City Hospital Kagoshima Japan
                [ 7 ] Department of Neurology Kagoshima Medical Association Hospital Kagoshima Japan
                [ 8 ] Department of Physical Therapy, Faculty of Medicine School of Health Sciences, Kagoshima University Kagoshima Japan
                Author notes
                [*] [* ] Correspondence

                Hiroshi Takashima, Department of Neurology and Geriatrics, Kagoshima University Graduate School of Medical and Dental Sciences, 8‐35‐1 Sakuragaoka, Kagoshima City, Kagoshima 890‐8520, Japan. Tel: 81‐99‐275‐5332; Fax: 81‐99‐265‐7164; E‐mail: thiroshi@ 123456m3.kufm.kagoshima-u.ac.jp

                Author information
                https://orcid.org/0000-0002-6187-9042
                https://orcid.org/0000-0002-5579-4384
                https://orcid.org/0000-0002-3808-7813
                https://orcid.org/0000-0002-1768-3181
                https://orcid.org/0009-0004-7867-2285
                https://orcid.org/0009-0001-2900-182X
                https://orcid.org/0009-0004-5714-9057
                https://orcid.org/0009-0006-8521-0964
                https://orcid.org/0000-0002-1217-0870
                https://orcid.org/0000-0002-4909-7769
                https://orcid.org/0000-0003-0691-1705
                https://orcid.org/0000-0002-6114-998X
                https://orcid.org/0000-0001-8215-8853
                https://orcid.org/0009-0009-9892-0828
                https://orcid.org/0000-0003-0989-6141
                Article
                ACN351936 ACN3-2023-08-0628.R2
                10.1002/acn3.51936
                10791012
                37916889
                94fa685a-3a48-4d10-a8fe-6d40fa6fad06
                © 2023 The Authors. Annals of Clinical and Translational Neurology published by Wiley Periodicals LLC on behalf of American Neurological Association.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 18 October 2023
                : 09 August 2023
                : 19 October 2023
                Page count
                Figures: 3, Tables: 1, Pages: 104, Words: 4823
                Funding
                Funded by: JSPS KAKENHI
                Award ID: JP18H02742
                Award ID: JP20K16604
                Award ID: JP21H02842
                Award ID: JP21K15702
                Award ID: JP22K07495
                Award ID: JP22K07519
                Award ID: JP22K15713
                Award ID: JP23K06931
                Funded by: Ministry of Health, Labour and Welfare, Japan , doi 10.13039/501100003478;
                Award ID: 201610002B
                Funded by: Research Committee of Ataxia, Health Labour Sciences Research
                This work was funded by JSPS KAKENHI grants JP18H02742, JP20K16604, JP21H02842, JP21K15702, JP22K07495, JP22K07519, JP22K15713, and JP23K06931; Ministry of Health, Labour and Welfare, Japan , doi 10.13039/501100003478; grant 201610002B; Research Committee of Ataxia, Health Labour Sciences Research.
                Categories
                Research Article
                Research Articles
                Custom metadata
                2.0
                January 2024
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.3.6 mode:remove_FC converted:16.01.2024

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