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      Ability of Rf5 and Rf6 to Restore Fertility of Chinsurah Boro II-type Cytoplasmic Male Sterile Oryza Sativa (ssp. Japonica) Lines

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          Abstract

          Background

          Three-line Oryza sativa (ssp. japonica) hybrids have been developed mainly using Chinsurah Boro II (BT)-type cytoplasmic male sterility (CMS). The Rf1 gene restores the fertility of BT-type CMS lines, and is the only fertility restorer gene ( Rf) that has been used to produce three-line japonica hybrids. Using more Rf genes to breed BT-type restorer lines may broaden the genetic diversity of the restorer lines, and represents a viable approach to improve the heterosis level of BT-type japonica hybrids.

          Results

          We identified two major Rf genes from ‘93-11’ that are involved in restoring the fertility of BT-type CMS plants. These genes were identified from resequenced chromosome segment substitution lines derived from a cross between the japonica variety ‘Nipponbare’ and the indica variety ‘93-11’. Molecular mapping results revealed that these genes were Rf5 and Rf6, which are the Rf genes that restore fertility to Honglian-type CMS lines. The BT-type F 1 hybrids with either Rf5 or Rf6 exhibited normal seed setting rates, but F 1 plants carrying Rf6 showed more stable seed setting rates than those of plants carrying Rf5 under heat-stress conditions. Furthermore, the seed setting rates of F 1 hybrids carrying both Rf5 and Rf6 were more stable than that of F 1 plants carrying only one Rf gene.

          Conclusion

          Rf6 is an important genetic resource for the breeding of BT-type japonica restorer lines. Our findings may be useful for breeders interested in developing BT-type japonica hybrids.

          Electronic supplementary material

          The online version of this article (doi:10.1186/s12284-017-0142-9) contains supplementary material, which is available to authorized users.

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          Most cited references26

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          High-throughput genotyping by whole-genome resequencing.

          The next-generation sequencing technology coupled with the growing number of genome sequences opens the opportunity to redesign genotyping strategies for more effective genetic mapping and genome analysis. We have developed a high-throughput method for genotyping recombinant populations utilizing whole-genome resequencing data generated by the Illumina Genome Analyzer. A sliding window approach is designed to collectively examine genome-wide single nucleotide polymorphisms for genotype calling and recombination breakpoint determination. Using this method, we constructed a genetic map for 150 rice recombinant inbred lines with an expected genotype calling accuracy of 99.94% and a resolution of recombination breakpoints within an average of 40 kb. In comparison to the genetic map constructed with 287 PCR-based markers for the rice population, the sequencing-based method was approximately 20x faster in data collection and 35x more precise in recombination breakpoint determination. Using the sequencing-based genetic map, we located a quantitative trait locus of large effect on plant height in a 100-kb region containing the rice "green revolution" gene. Through computer simulation, we demonstrate that the method is robust for different types of mapping populations derived from organisms with variable quality of genome sequences and is feasible for organisms with large genome sizes and low polymorphisms. With continuous advances in sequencing technologies, this genome-based method may replace the conventional marker-based genotyping approach to provide a powerful tool for large-scale gene discovery and for addressing a wide range of biological questions.
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            Interactions of mitochondrial and nuclear genes that affect male gametophyte development.

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              Cytoplasmic male sterility: a window to the world of plant mitochondrial-nuclear interactions.

              Mitochondrial function depends on the coordinate action of nuclear and mitochondrial genomes. The genetic dissection of these interactions presents special challenges in obligate aerobes, because the viability of these organisms depends on mitochondrial respiration. The plant trait cytoplasmic male sterility (CMS) is determined by the mitochondrial genome and is associated with a pollen sterility phenotype that can be suppressed or counteracted by nuclear genes known as restorer-of-fertility genes. Here, I review the nature and the origin of the genes that determine CMS, together with recent investigations that have exploited CMS to provide new insights into plant mitochondrial-nuclear communication. These studies have implicated mitochondrial signaling pathways, including those involved in regulating cell death and nuclear gene expression, in the elaboration of CMS. The molecular cloning of nuclear genes that restore fertility (i.e. restorer-of-fertility genes) has identified genes encoding pentatricopeptide-repeat proteins as key regulators of plant mitochondrial gene expression.
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                Author and article information

                Contributors
                +86-514-87972148 , sztang@yzu.edu.cn
                Journal
                Rice (N Y)
                Rice (N Y)
                Rice
                Springer US (New York )
                1939-8425
                1939-8433
                21 January 2017
                21 January 2017
                2017
                : 10
                : 2
                Affiliations
                GRID grid.268415.c, Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, College of Agriculture, , Yangzhou University, ; Yangzhou, 225009 China
                Article
                142
                10.1186/s12284-017-0142-9
                5253138
                28110460
                94d29665-2876-41c5-b865-6a5110a91e89
                © The Author(s). 2017

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

                History
                : 9 November 2016
                : 17 January 2017
                Funding
                Funded by: National Key Research and Development Program
                Award ID: 2016YFD0101107
                Award Recipient :
                Funded by: the National Natural Science Foundation
                Award ID: 31071384
                Award Recipient :
                Funded by: the Priority Academic Program Development of Jiangsu Higher Education Institutions.
                Categories
                Original Article
                Custom metadata
                © The Author(s) 2017

                Agriculture
                japonica,bt-type cms,fertility restorer gene (rf),gene mapping,restoration ability
                Agriculture
                japonica, bt-type cms, fertility restorer gene (rf), gene mapping, restoration ability

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