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      Phloem wedges in Malpighiaceae: origin, structure, diversification, and systematic relevance

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          Abstract

          Background

          Phloem wedges furrowing the wood are one of the most notorious, widespread types of cambial variants in Angiosperms. Many lianas in Malpighiaceae show these variations in the arrangement of the secondary tissues. Here we explore their ontogeny, structure, and evolution in Malpighiaceae, where phloem wedges appeared multiple times, showing how they have contributed to the anatomical diversification of the family. Using a broad sampling with 143 species from 50 genera, covering all major lineages in Malpighiaceae, we crossed data from ontogeny, stem anatomy, and phylogenetic comparative methods to determine ontogenetic trajectories, final anatomical architectures, and evolution within the most recent phylogeny for the family.

          Results

          Phloem wedges appeared exclusively in lianas and disappeared in shrub lineages nested within liana lineages. At the onset of development, the vascular cambium is regular, producing secondary tissues homogeneously across its girth, but soon, portions of the cambium in between the leaf insertions switch their activity producing less wood and more phloem, initially generating phloem arcs, which progress into phloem wedges. In the formation of these wedges, two ontogenetic trajectories were found, one that maintains the continuity of the cambium, and another where the cambium gets dissected. Phloem wedges frequently remain as the main cambial variant in several lineages, while in others there are additional steps toward more complex cambial variants, such as fissured stems, or included phloem wedges, the latter a novel type of interxylary phloem first described for the family.

          Conclusions

          Phloem wedges evolved exclusively in lianas, with two different ontogenies explaining the 10 independent origins of phloem wedges in Malpighiaceae. The presence of phloem wedges has favored the evolution of even more complex cambial variants such as fissured stems and interxylary phloem.

          Supplementary Information

          The online version contains supplementary material available at 10.1186/s13227-022-00196-3.

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          Most cited references61

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          RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

          Motivation: Phylogenies are increasingly used in all fields of medical and biological research. Moreover, because of the next-generation sequencing revolution, datasets used for conducting phylogenetic analyses grow at an unprecedented pace. RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analyses of large datasets under maximum likelihood. Since the last RAxML paper in 2006, it has been continuously maintained and extended to accommodate the increasingly growing input datasets and to serve the needs of the user community. Results: I present some of the most notable new features and extensions of RAxML, such as a substantial extension of substitution models and supported data types, the introduction of SSE3, AVX and AVX2 vector intrinsics, techniques for reducing the memory requirements of the code and a plethora of operations for conducting post-analyses on sets of trees. In addition, an up-to-date 50-page user manual covering all new RAxML options is available. Availability and implementation: The code is available under GNU GPL at https://github.com/stamatak/standard-RAxML. Contact: alexandros.stamatakis@h-its.org Supplementary information: Supplementary data are available at Bioinformatics online.
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            Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

            Abstract Bayesian inference of phylogeny using Markov chain Monte Carlo (MCMC) plays a central role in understanding evolutionary history from molecular sequence data. Visualizing and analyzing the MCMC-generated samples from the posterior distribution is a key step in any non-trivial Bayesian inference. We present the software package Tracer (version 1.7) for visualizing and analyzing the MCMC trace files generated through Bayesian phylogenetic inference. Tracer provides kernel density estimation, multivariate visualization, demographic trajectory reconstruction, conditional posterior distribution summary, and more. Tracer is open-source and available at http://beast.community/tracer.
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              jModelTest 2: more models, new heuristics and parallel computing.

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                Author and article information

                Contributors
                angqca@gmail.com , ang_qcastl@ciencias.unam.mx
                Journal
                EvoDevo
                Evodevo
                EvoDevo
                BioMed Central (London )
                2041-9139
                28 April 2022
                28 April 2022
                2022
                : 13
                : 11
                Affiliations
                [1 ]GRID grid.9486.3, ISNI 0000 0001 2159 0001, Present Address: Posgrado en Ciencias Biológicas, Instituto de Biología, , Universidad Nacional Autónoma de México, ; Circuito Zona Deportiva s.n. de Ciudad Universitaria, Coyoacán, 04510 Mexico City, Mexico
                [2 ]GRID grid.9486.3, ISNI 0000 0001 2159 0001, Present Address: Departamento de Botánica, Instituto de Biología, , Universidad Nacional Autónoma de México, ; Circuito Zona Deportiva s.n. de Ciudad Universitaria, Coyoacán, 04510 Mexico City, Mexico
                Author information
                http://orcid.org/0000-0003-1462-1978
                http://orcid.org/0000-0003-0368-2388
                Article
                196
                10.1186/s13227-022-00196-3
                9052467
                35484568
                94c2b270-dca6-4ec8-85c9-0dd826d3526b
                © The Author(s) 2022

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 13 December 2021
                : 4 April 2022
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100003141, Consejo Nacional de Ciencia y Tecnología;
                Award ID: 1003238
                Award Recipient :
                Funded by: Programa de Apoyos a Proyectos de Investigación e Innovación Tecnológica
                Award ID: 200319
                Award ID: 200521
                Award Recipient :
                Categories
                Research
                Custom metadata
                © The Author(s) 2022

                Developmental biology
                cambial variant,discontinuous cambium,lianas,limiting rays,malpighiaceae,phloem,phloem wedges,vascular cambium,xylem

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