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      A wheat cysteine-rich receptor-like kinase confers broad-spectrum resistance against Septoria tritici blotch

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          Abstract

          The poverty of disease resistance gene reservoirs limits the breeding of crops for durable resistance against evolutionary dynamic pathogens. Zymoseptoria tritici which causes Septoria tritici blotch (STB), represents one of the most genetically diverse and devastating wheat pathogens worldwide. No fully virulent Z. tritici isolates against synthetic wheats carrying the major resistant gene Stb16q have been identified. Here, we use comparative genomics, mutagenesis and complementation to identify Stb16q, which confers broad-spectrum resistance against Z. tritici. The Stb16q gene encodes a plasma membrane cysteine-rich receptor-like kinase that was recently introduced into cultivated wheat and which considerably slows penetration and intercellular growth of the pathogen.

          Abstract

          Septoria tritici blotch (STB) is a devastating foliar disease affecting worldwide wheat production. Here, the authors report a cysteine-rich receptor-like kinase that can confer resistance to Zymoseptoria tritici, the pathogen that causes STB, and slow penetration and intercellular growth of the pathogen.

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          Fiji: an open-source platform for biological-image analysis.

          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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            A new mathematical model for relative quantification in real-time RT-PCR.

            M. Pfaffl (2001)
            Use of the real-time polymerase chain reaction (PCR) to amplify cDNA products reverse transcribed from mRNA is on the way to becoming a routine tool in molecular biology to study low abundance gene expression. Real-time PCR is easy to perform, provides the necessary accuracy and produces reliable as well as rapid quantification results. But accurate quantification of nucleic acids requires a reproducible methodology and an adequate mathematical model for data analysis. This study enters into the particular topics of the relative quantification in real-time RT-PCR of a target gene transcript in comparison to a reference gene transcript. Therefore, a new mathematical model is presented. The relative expression ratio is calculated only from the real-time PCR efficiencies and the crossing point deviation of an unknown sample versus a control. This model needs no calibration curve. Control levels were included in the model to standardise each reaction run with respect to RNA integrity, sample loading and inter-PCR variations. High accuracy and reproducibility (<2.5% variation) were reached in LightCycler PCR using the established mathematical model.
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              The plant immune system.

              Many plant-associated microbes are pathogens that impair plant growth and reproduction. Plants respond to infection using a two-branched innate immune system. The first branch recognizes and responds to molecules common to many classes of microbes, including non-pathogens. The second responds to pathogen virulence factors, either directly or through their effects on host targets. These plant immune systems, and the pathogen molecules to which they respond, provide extraordinary insights into molecular recognition, cell biology and evolution across biological kingdoms. A detailed understanding of plant immune function will underpin crop improvement for food, fibre and biofuels production.
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                Author and article information

                Contributors
                cyrille.saintenac@inrae.fr
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                19 January 2021
                19 January 2021
                2021
                : 12
                : 433
                Affiliations
                [1 ]GRID grid.503180.f, ISNI 0000 0004 0613 5360, Université Clermont Auvergne, INRAE, GDEC, ; 63000 Clermont-Ferrand, France
                [2 ]GRID grid.4818.5, ISNI 0000 0001 0791 5666, Wageningen University and Research (Wageningen Plant Research, Biointeractions and Plant Health), ; PO Box 16, 6700AA Wageningen, The Netherlands
                [3 ]GRID grid.507621.7, CNRGV (Centre National des Ressources Génomiques Végétales), INRAE, ; UPR 1258 Castanet-Tolosan, France
                [4 ]GRID grid.463419.d, ISNI 0000 0001 0946 3608, United States Department of Agriculture-Agricultural Research Service, Cereal Crops Research Unit, Edward T. Schafer Agricultural Research Center, ; Fargo, ND 58102 USA
                [5 ]GRID grid.4444.0, ISNI 0000 0001 2112 9282, INRAE, Université Côte d’Azur, CNRS, ISA, ; 06903 Sophia Antipolis, France
                [6 ]GRID grid.5801.c, ISNI 0000 0001 2156 2780, Plant Pathology, Institute of Integrative Biology, ETH Zürich, ; 8092 Zürich, Switzerland
                [7 ]Florimond-Desprez, 3 rue Florimond-Desprez, BP 41, 59242 Cappelle-en-Pevele, France
                [8 ]GRID grid.169077.e, ISNI 0000 0004 1937 2197, Present Address: Department of Agronomy, Purdue University, ; West Lafayette, IN 47907 USA
                [9 ]Present Address: Seed and Plant Improvement Research Department, Safiabad Agricultural and Natural Resources Research and Education Center, AREEO, Dezful, Iran
                [10 ]GRID grid.11480.3c, ISNI 0000000121671098, Present Address: Department of Plant Biology and Ecology, , University of the Basque Country (UPV/EHU), ; Apdo. 644, 48080 Bilbao, Spain
                [11 ]GRID grid.412041.2, ISNI 0000 0001 2106 639X, Present Address: Université de Bordeaux, 146 rue Leo-Saignat, ; Bordeaux, Cedex 33076 France
                [12 ]GRID grid.508749.7, Present Address: Inari Agriculture, ; One Kendall Square Building 600/700, Cambridge, MA 02139 USA
                [13 ]GRID grid.5690.a, ISNI 0000 0001 2151 2978, Present Address: Centro de Biotecnología y Genómica de Plantas (CBGP, UPM-INIA), Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA). Campus de Montegancedo-UPM, ; 28223-Pozuelo de Alarcón Madrid, Spain
                [14 ]GRID grid.4818.5, ISNI 0000 0001 0791 5666, Present Address: Wageningen University (Laboratory of Phytopathology), ; 6700AA Wageningen, The Netherlands
                Author information
                http://orcid.org/0000-0002-3791-301X
                http://orcid.org/0000-0001-6605-3488
                http://orcid.org/0000-0003-3323-1852
                http://orcid.org/0000-0002-3668-9503
                http://orcid.org/0000-0002-2732-6911
                Article
                20685
                10.1038/s41467-020-20685-0
                7815785
                33469010
                94453594-4ceb-4541-957a-64a5b8831df1
                © The Author(s) 2021

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 7 April 2020
                : 2 December 2020
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                © The Author(s) 2021

                Uncategorized
                plant breeding,plant immunity
                Uncategorized
                plant breeding, plant immunity

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