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      TOR and RPS6 transmit light signals to enhance protein translation in deetiolating Arabidopsis seedlings

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          Significance

          Light enhances the translation efficiency of thousands of mRNAs during photomorphogenic development in Arabidopsis, but the underlying molecular mechanism remains elusive. Here we show that light activates the auxin-target of rapamycin (TOR)-ribosome protein S6 (RPS6) pathway to enhance translation in deetiolating Arabidopsis. We discovered that CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1) represses TOR activity in dark-grown seedlings. The perception of far-red and blue light by photoreceptors inactivates COP1, which leads to the derepression of the auxin-TOR-RPS6 pathway and enhanced de novo protein synthesis. Our study revealed a light-triggered signaling pathway for translational regulation. This sophisticated regulation also functions to ensure that young seedlings have strict skotomorphogenic development in the dark and a timely switch to photomorphogenic development.

          Abstract

          Deetiolation is an essential developmental process transforming young plant seedlings into the vegetative phase with photosynthetic activities. Light signals initiate this important developmental process by triggering massive reprogramming of the transcriptome and translatome. Compared with the wealth of knowledge of transcriptional regulation, the molecular mechanism underlying this light-triggered translational enhancement remains unclear. Here we show that light-enhanced translation is orchestrated by a light perception and signaling pathway composed of photoreceptors, CONSTITUTIVE PHOTOMORPHOGENESIS 1 (COP1), the phytohormone auxin, target of rapamycin (TOR), and ribosomal protein S6 (RPS6). In deetiolating Arabidopsis seedlings, photoreceptors, including phytochrome A and cryptochromes, perceive far-red and blue light to inactivate the negative regulator COP1, which leads to activation of the auxin pathway for TOR-dependent phosphorylation of RPS6. Arabidopsis mutants defective in TOR, RPS6A, or RPS6B exhibited delayed cotyledon opening, a characteristic of the deetiolating process to ensure timely vegetative development of a young seedling. This study provides a mechanistic view of light-triggered translational enhancement in deetiolating Arabidopsis.

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          Most cited references41

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          Light-regulated transcriptional networks in higher plants.

          Plants have evolved complex and sophisticated transcriptional networks that mediate developmental changes in response to light. These light-regulated processes include seedling photomorphogenesis, seed germination and the shade-avoidance and photoperiod responses. Understanding the components and hierarchical structure of the transcriptional networks that are activated during these processes has long been of great interest to plant scientists. Traditional genetic and molecular approaches have proved powerful in identifying key regulatory factors and their positions within these networks. Recent genomic studies have further revealed that light induces massive reprogramming of the plant transcriptome, and that the early light-responsive genes are enriched in transcription factors. These combined approaches provide new insights into light-regulated transcriptional networks.
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            Glc-TOR signalling leads transcriptome reprogramming and meristem activation

            Meristems encompass stem/progenitor cells that sustain postembryonic growth of all plant organs. How meristems are activated and sustained by nutrient signalling remains enigmatic in photosynthetic plants. Combining chemical manipulations and chemical genetics at the photoautotrophic transition checkpoint, we reveal that shoot photosynthesis-derived glucose drives target-of-rapamycin (TOR) signalling relays through glycolysis and mitochondrial bioenergetics to control root meristem activation, which is decoupled from direct glucose sensing, growth-hormone signalling, and stem-cell maintenance. Surprisingly, glucose-TOR signalling dictates transcriptional reprogramming of remarkable gene sets involved in central and secondary metabolism, cell cycle, transcription, signalling, transport and folding. Systems, cellular and genetic analyses uncover TOR phosphorylation of E2Fa transcription factor for an unconventional activation of S-phase genes, and glucose-signalling defects in e2fa root meristems. Our findings establish pivotal roles of glucose-TOR signalling in unprecedented transcriptional networks wiring central metabolism and biosynthesis for energy and biomass production, and integrating localized stem/progenitor-cell proliferation through inter-organ nutrient coordination to control developmental transition and growth.
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              The photomorphogenic repressors COP1 and DET1: 20 years later.

              COP1 and DET1 are among the first repressors of photomorphogenesis to be identified, more than 20 years ago. Discovery of these repressors as conserved regulators of the ubiquitin-proteasome system has established protein degradation as a central theme in light signal transduction. COP1 is a RING E3 ubiquitin ligase that targets key regulators for degradation, and DET1 complexes with COP10 and DDB1, which is proposed to aid in COP1-mediated degradation. Recent studies have strengthened the role of COP1 as a major signaling center. DET1 is also emerging as a chromatin regulator in repressing gene expression. Here, we review current understanding on COP1 and DET1, with a focus on their role as part of two distinct, multimeric CUL4-based E3 ligases. Copyright © 2012 Elsevier Ltd. All rights reserved.
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                Author and article information

                Journal
                Proc Natl Acad Sci U S A
                Proc. Natl. Acad. Sci. U.S.A
                pnas
                pnas
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                11 December 2018
                27 November 2018
                27 November 2018
                : 115
                : 50
                : 12823-12828
                Affiliations
                [1] aInstitute of Plant and Microbial Biology, Academia Sinica , Taipei 11529, Taiwan;
                [2] bBiotechnology Center in Southern Taiwan, Academia Sinica , Tainan 74145, Taiwan;
                [3] cAgricultural Biotechnology Research Center, Academia Sinica , Taipei 11529, Taiwan;
                [4] dDepartment of Genetics, Harvard Medical School , Boston, MA 02115;
                [5] eDepartment of Molecular Biology, Massachusetts General Hospital , Boston, MA 02114;
                [6] fCenter for Computational and Integrative Biology, Massachusetts General Hospital , Boston, MA 02114;
                [7] gBasic Forestry and Proteomics Research Center, Haixia Institute of Science and Technology, Fujiang Agricultural and Forestry University , Fuzhou, Fujian 350002, People’s Republic of China
                Author notes
                1To whom correspondence should be addressed. Email: shuwu@ 123456gate.sinica.edu.tw .

                Edited by Winslow R. Briggs, Carnegie Institution for Science, Stanford, CA, and approved October 30, 2018 (received for review June 5, 2018)

                Author contributions: G.-H.C., J.S., and S.-H.W. designed research; G.-H.C. and M.-J.L. performed research; G.-H.C. contributed new reagents/analytic tools; G.-H.C., M.-J.L., Y.X., J.S., and S.-H.W. analyzed data; and G.-H.C., M.-J.L., Y.X., J.S., and S.-H.W. wrote the paper.

                Author information
                http://orcid.org/0000-0002-7179-3138
                Article
                201809526
                10.1073/pnas.1809526115
                6294885
                30482859
                93e8a623-c209-4a8b-9f5f-0f86edd274c6
                Copyright © 2018 the Author(s). Published by PNAS.

                This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND).

                History
                Page count
                Pages: 6
                Funding
                Funded by: Ministry of Science and Technology, Taiwan (MOST) 501100004663
                Award ID: 103-2321-B-001-060-
                Award ID: 104-2321-B-001-027-
                Award ID: 105-2321-B-001-017-
                Award ID: 106-2321-B-001-011-
                Award ID: 107-2321-B-001-007
                Award Recipient : Shu-Hsing Wu
                Funded by: HHS | National Institutes of Health (NIH) 100000002
                Award ID: R01GM60493
                Award Recipient : Jen Sheen
                Funded by: Academia Sinica 501100001869
                Award ID: AS-102-IA
                Award Recipient : Shu-Hsing Wu
                Categories
                Biological Sciences
                Plant Biology

                tor,rps6,translation,photomorphogenesis,light
                tor, rps6, translation, photomorphogenesis, light

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