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      Candidatus Tisiphia’ is a widespread Rickettsiaceae symbiont in the mosquito Anopheles plumbeus (Diptera: Culicidae)

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          Abstract

          Symbiotic bacteria can alter host biology by providing protection from natural enemies, or alter reproduction or vectoral competence. Symbiont‐linked control of vector‐borne disease in Anopheles has been hampered by a lack of symbioses that can establish stable vertical transmission in the host. Previous screening found the symbiont ‘ Candidatus Tisiphia’ in Anopheles plumbeus, an aggressive biter and potential secondary vector of malaria parasites and West Nile virus. We screened samples collected over 10‐years across Germany and used climate databases to assess environmental influence on incidence. We observed a 95% infection rate, and that the frequency of infection did not fluctuate with broad environmental factors. Maternal inheritance is indicated by presence in the ovaries through FISH microscopy. Finally, we assembled a high‐quality 1.6 Mbp draft genome of ‘ Ca. Tisiphia’ to explore its phylogeny and potential metabolic competence. The infection is closely related to strains found in Culicoides biting midges and shows similar patterns of metabolism, providing no evidence of the capacity to synthesize B‐vitamins. This infection offers avenues for onward research in anopheline mosquito symbioses. Additionally, it provides future opportunity to study the impact of ‘ Ca. Tisiphia’ on natural and transinfected hosts, especially in relation to reproductive fitness and vectorial competence and capacity.

          Abstract

          Control of mosquito populations and their vector competence is commonly achieved using symbionts, but efforts are hampered in anophelines by limited compatible symbiotic partners. We establish that the Rickettsiaceae symbiont, Ca. Tisiphia', resides in the ovaries of Anopheles plumbeus and infects >95% of German populations. We assemble the symbiont's genome and provide supporting phylogenomic and metabolic analyses. This infection provides an opportunity onward research in anopheline mosquito symbioses, and the control of vector‐borne disease.

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          Trimmomatic: a flexible trimmer for Illumina sequence data

          Motivation: Although many next-generation sequencing (NGS) read preprocessing tools already existed, we could not find any tool or combination of tools that met our requirements in terms of flexibility, correct handling of paired-end data and high performance. We have developed Trimmomatic as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data. Results: The value of NGS read preprocessing is demonstrated for both reference-based and reference-free tasks. Trimmomatic is shown to produce output that is at least competitive with, and in many cases superior to, that produced by other tools, in all scenarios tested. Availability and implementation: Trimmomatic is licensed under GPL V3. It is cross-platform (Java 1.5+ required) and available at http://www.usadellab.org/cms/index.php?page=trimmomatic Contact: usadel@bio1.rwth-aachen.de Supplementary information: Supplementary data are available at Bioinformatics online.
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            Matplotlib: A 2D Graphics Environment

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              ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates

              Model-based molecular phylogenetics plays an important role in comparisons of genomic data, and model selection is a key step in all such analyses. We present ModelFinder, a fast model-selection method that greatly improves the accuracy of phylogenetic estimates. The improvement is achieved by incorporating a model of rate-heterogeneity across sites not previously considered in this context, and by allowing concurrent searches of model-space and tree-space.
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                Author and article information

                Contributors
                davstaff@liverpool.ac.uk
                Journal
                Environ Microbiol
                Environ Microbiol
                10.1111/(ISSN)1462-2920
                EMI
                Environmental Microbiology
                John Wiley & Sons, Inc. (Hoboken, USA )
                1462-2912
                1462-2920
                02 September 2023
                December 2023
                : 25
                : 12 ( doiID: 10.1111/emi.v25.12 )
                : 3064-3074
                Affiliations
                [ 1 ] Institute of Infection, Veterinary and Ecological Sciences (IVES) University of Liverpool Liverpool UK
                [ 2 ] Iridian Genomes Bethesda Maryland USA
                [ 3 ] Institute of Infectology (IMED) Friedrich‐Loeffler‐Institut, Federal Research Institute for Animal Health Greifswald Isle of Riems Germany
                [ 4 ] Land Use and Governance Leibniz Centre for Agricultural Landscape Research (ZALF) Müncheberg Germany
                Author notes
                [*] [* ] Correspondence

                Helen R. Davison, Institute of Infection, Veterinary and Ecological Sciences (IVES), University of Liverpool, Crown Street Liverpool L69 7ZB, UK.

                Email: davstaff@ 123456liverpool.ac.uk

                Author information
                https://orcid.org/0000-0002-4302-5756
                https://orcid.org/0009-0007-6721-677X
                https://orcid.org/0000-0002-5642-4203
                https://orcid.org/0000-0003-2754-3171
                https://orcid.org/0000-0002-1074-6047
                https://orcid.org/0000-0002-7163-7784
                Article
                EMI16486
                10.1111/1462-2920.16486
                10947512
                37658745
                91c568f7-22ab-42b9-8204-d8c7e5112806
                © 2023 The Authors. Environmental Microbiology published by Applied Microbiology International and John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 02 March 2023
                : 08 August 2023
                Page count
                Figures: 4, Tables: 1, Pages: 11, Words: 8427
                Funding
                Funded by: Iridian Genomes, Genomic Studies of Eukaryotic Taxa
                Award ID: IRGEN_RG_2021‐1345
                Funded by: Natural Environment Research Council , doi 10.13039/501100000270;
                Award ID: NE/L002450/1
                Funded by: BBSRC , doi 10.13039/501100000268;
                Award ID: BB/M012441/1
                Categories
                Research Article
                Research Articles
                Custom metadata
                2.0
                December 2023
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.3.9 mode:remove_FC converted:18.03.2024

                Microbiology & Virology
                Microbiology & Virology

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