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      An update on vitamin B12-related gene polymorphisms and B12 status

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          Abstract

          Background

          Vitamin B12 is an essential micronutrient in humans needed for health maintenance. Deficiency of vitamin B12 has been linked to dietary, environmental and genetic factors. Evidence for the genetic basis of vitamin B12 status is poorly understood. However, advancements in genomic techniques have increased the knowledge-base of the genetics of vitamin B12 status. Based on the candidate gene and genome-wide association (GWA) studies, associations between genetic loci in several genes involved in vitamin B12 metabolism have been identified.

          Objective

          The objective of this literature review was to identify and discuss reports of associations between single-nucleotide polymorphisms (SNPs) in vitamin B12 pathway genes and their influence on the circulating levels of vitamin B12.

          Methods

          Relevant articles were obtained through a literature search on PubMed through to May 2017. An article was included if it examined an association of a SNP with serum or plasma vitamin B12 concentration. Beta coefficients and odds ratios were used to describe the strength of an association, and a P < 0.05 was considered as statistically significant. Two reviewers independently evaluated the eligibility for the inclusion criteria and extracted the data.

          Results

          From 23 studies which fulfilled the selection criteria, 16 studies identified SNPs that showed statistically significant associations with vitamin B12 concentrations. Fifty-nine vitamin B12-related gene polymorphisms associated with vitamin B12 status were identified in total, from the following populations: African American, Brazilian, Canadian, Chinese, Danish, English, European ancestry, Icelandic, Indian, Italian, Latino, Northern Irish, Portuguese and residents of the USA.

          Conclusion

          Overall, the data analyzed suggests that ethnic-specific associations are involved in the genetic determination of vitamin B12 concentrations. However, despite recent success in genetic studies, the majority of identified genes that could explain variation in vitamin B12 concentrations were from Caucasian populations. Further research utilizing larger sample sizes of non-Caucasian populations is necessary in order to better understand these ethnic-specific associations.

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          Most cited references86

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          Chapter 11: Genome-Wide Association Studies

          Genome-wide association studies (GWAS) have evolved over the last ten years into a powerful tool for investigating the genetic architecture of human disease. In this work, we review the key concepts underlying GWAS, including the architecture of common diseases, the structure of common human genetic variation, technologies for capturing genetic information, study designs, and the statistical methods used for data analysis. We also look forward to the future beyond GWAS.
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            Vitamin B12 deficiency as a worldwide problem.

            Pernicious anemia is a common cause of megaloblastic anemia throughout the world and especially in persons of European or African descent. Dietary deficiency of vitamin B12 due to vegetarianism is increasing and causes hyperhomocysteinemia. The breast-fed infant of a vitamin B12-deficient mother is at risk for severe developmental abnormalities, growth failure, and anemia. Elevated methylmalonic acid and/or total homocysteine are sensitive indicators of vitamin B12-deficient diets and correlate with clinical abnormalities. Dietary vitamin B12 deficiency is a severe problem in the Indian subcontinent, Mexico, Central and South America, and selected areas in Africa. Dietary vitamin B12 deficiency is not prevalent in Asia, except in vegetarians. Areas for research include intermittent vitamin B12 supplement dosing and better measurements of the bioavailability of B12 in fermented vegetarian foods and algae.
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              Identification of the gene responsible for methylmalonic aciduria and homocystinuria, cblC type.

              Methylmalonic aciduria and homocystinuria, cblC type (OMIM 277400), is the most common inborn error of vitamin B(12) (cobalamin) metabolism, with about 250 known cases. Affected individuals have developmental, hematological, neurological, metabolic, ophthalmologic and dermatologic clinical findings. Although considered a disease of infancy or childhood, some individuals develop symptoms in adulthood. The cblC locus was mapped to chromosome region 1p by linkage analysis. We refined the chromosomal interval using homozygosity mapping and haplotype analyses and identified the MMACHC gene. In 204 individuals, 42 different mutations were identified, many consistent with a loss of function of the protein product. One mutation, 271dupA, accounted for 40% of all disease alleles. Transduction of wild-type MMACHC into immortalized cblC fibroblast cell lines corrected the cellular phenotype. Molecular modeling predicts that the C-terminal region of the gene product folds similarly to TonB, a bacterial protein involved in energy transduction for cobalamin uptake.
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                Author and article information

                Contributors
                s.surendran@pgr.reading.ac.uk
                A.K.Antonysunil@warwick.ac.uk
                P.Saravanan@warwick.ac.uk
                I.M.A.Shatwan@pgr.reading.ac.uk
                j.a.lovegrove@reading.ac.uk
                +44 (0) 118 378 8702 , v.karani@reading.ac.uk
                Journal
                Genes Nutr
                Genes Nutr
                Genes & Nutrition
                BioMed Central (London )
                1555-8932
                1865-3499
                6 February 2018
                6 February 2018
                2018
                : 13
                : 2
                Affiliations
                [1 ]ISNI 0000 0004 0457 9566, GRID grid.9435.b, Hugh Sinclair Unit of Human Nutrition, Department of Food and Nutritional Sciences and Institute for Cardiovascular and Metabolic Research (ICMR), , University of Reading, ; PO Box 226, Whiteknights, Reading, RG6 6AP UK
                [2 ]ISNI 0000 0000 8809 1613, GRID grid.7372.1, Warwick Medical School - Population Evidence and Technologies, , University of Warwick, ; Coventry, CV4 7AL UK
                [3 ]ISNI 0000 0004 0417 7591, GRID grid.415503.6, UK Academic Department of Diabetes and Metabolism, , George Eliot Hospital, ; Nuneaton, UK
                Article
                591
                10.1186/s12263-018-0591-9
                5801754
                29445423
                91424307-9183-4ec3-b74c-1bf3e175bc32
                © The Author(s) 2018

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 4 August 2017
                : 23 January 2018
                Categories
                Review
                Custom metadata
                © The Author(s) 2018

                Nutrition & Dietetics
                vitamin b12,vitamin b12 levels,cobalamin,genetic epidemiology,polymorphisms,genetics of vitamin b12

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