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      Toll-Like Receptor 4 Polymorphisms (896A/G and 1196C/T) as an Indicator of COVID-19 Severity in a Convenience Sample of Egyptian Patients

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          Abstract

          Background

          The clinical spectrum of COVID-19 is extremely variable. Thus, it is likely that the heterogeneity in the genetic make-up of the host may contribute to disease severity. Toll‐like receptor (TLR)-4 plays a vital role in the innate immune response to SARS-CoV-2 infection. The susceptibility of humans to severe COVID-19 concerning TLR-4 single nucleotide polymorphisms (SNPs) has not been well examined.

          Objective

          The goal of this research was to investigate the association between TLR-4 (Asp299Gly and Thr399Ile) SNPs and COVID-19 severity and progression as well as the cytokine storm in Egyptian patients.

          Methods

          We genotyped 300 adult COVID-19 Egyptian patients for TLR-4 (Asp299Gly and Thr399Ile) SNPs using PCR-restriction fragment length polymorphism (PCR-RFLP). We also measured interleukin (IL)-6 levels by enzyme-linked immunosorbent assay (ELISA) as an indicator of the cytokine storm.

          Results

          The minor 299Gly (G) and 399Ile (T) alleles were associated with a significant (P < 0.001) positive risk of severe COVID-19 (OR = 3.14; 95% CI = 2.02–4.88 and OR = 2.75; 95% CI = 1.66–4.57), their frequency in the severe group were 71.8% (84/150) and 70.7% (58/150), respectively. We detected significant differences between TLR-4 (Asp299Gly, Thr399Ile) genotypes with regard to serum levels of IL-6. Levels of IL-6 increased significantly with the presence of the mutant 299Gly (G) and 399Ile (T) alleles to reach the highest levels in the Gly299Gly (GG) and the Ile399Ile (TT) genotypes (170 pg/mL (145–208.25) and 112 pg/mL (24–284.75), respectively).

          Conclusion

          The TLR-4 (Asp299Gly and Thr399Ile) minor alleles 299Gly (G) and 399Ile (T) are associated with COVID-19 severity, mortality, and the cytokine storm.

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          Most cited references38

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          Time Course of Lung Changes On Chest CT During Recovery From 2019 Novel Coronavirus (COVID-19) Pneumonia

          Background Chest CT is used to assess the severity of lung involvement in COVID-19 pneumonia. Purpose To determine the change in chest CT findings associated with COVID-19 pneumonia from initial diagnosis until patient recovery. Materials and Methods This retrospective review included patients with RT-PCR confirmed COVID-19 infection presenting between 12 January 2020 to 6 February 2020. Patients with severe respiratory distress and/ or oxygen requirement at any time during the disease course were excluded. Repeat Chest CT was obtained at approximately 4 day intervals. The total CT score was the sum of lung involvement (5 lobes, score 1-5 for each lobe, range, 0 none, 25 maximum) was determined. Results Twenty one patients (6 males and 15 females, age 25-63 years) with confirmed COVID-19 pneumonia were evaluated. These patients under went a total of 82 pulmonary CT scans with a mean interval of 4±1 days (range: 1-8 days). All patients were discharged after a mean hospitalized period of 17±4 days (range: 11-26 days). Maximum lung involved peaked at approximately 10 days (with the calculated total CT score of 6) from the onset of initial symptoms (R2=0.25), p<0.001). Based on quartiles of patients from day 0 to day 26 involvement, 4 stages of lung CT were defined: Stage 1 (0-4 days): ground glass opacities (GGO) in 18/24 (75%) patients with the total CT score of 2±2; (2)Stage-2 (5-8d days): increased crazy-paving pattern 9/17 patients (53%) with a increase in total CT score (6±4, p=0.002); (3) Stage-3 (9-13days): consolidation 19/21 (91%) patients with the peak of total CT score (7±4); (4) Stage-4 (≥14 days): gradual resolution of consolidation 15/20 (75%) patients with a decreased total CT score (6±4) without crazy-paving pattern. Conclusion In patients recovering from COVID-19 pneumonia (without severe respiratory distress during the disease course), lung abnormalities on chest CT showed greatest severity approximately 10 days after initial onset of symptoms.
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            Lymphopenia predicts disease severity of COVID-19: a descriptive and predictive study

            Dear Editor, An outbreak of an unknown infectious pneumonia has recently occurred in Wuhan, China. 1 The pathogen of the disease was quickly identified as a novel coronavirus (SARS-CoV-2, severe acute respiratory syndrome coronavirus 2), and the disease was named coronavirus disease-19 (COVID-19). 2 The virus has so far caused 78,959 confirmed cases and 2791 deaths in China according to the reports of government. COVID-19 has been spreading in many countries such as Japan, Korea, Singapore, Iran, and Italia. The clinical manifestation of COVID-19 include fever, cough, fatigue, muscle pain, diarrhea, and pneumonia, which can develop to acute respiratory distress syndrome, metabolic acidosis, septic shock, coagulation dysfunction, and organ failure such as liver, kidney, and heart failure. 1,3,4 Unfortunately, there is no effective medication other than comprehensive support. However, the mild type of COVID-19 patients can recover shortly after appropriate clinical intervention. The moderate type patients, especially the elderly or the ones with comorbidity, can worsen and became severe, indicating high mortality rate. 3,4 However, efficient indicators for the disease severity, therapeutic response and disease outcome have not been fully investigated. Once such indicators are present, reasonable medication and care can be inclined, which is believed to significantly reduce the mortality rate of severe patients. Routine examinations include complete blood count, coagulation profile, and serum biochemical test (including renal and liver function, creatine kinase, lactate dehydrogenase, and electrolytes). Complete blood count is the most available, efficient and economic examination. This study aims to retrospect and analyze the time-courses of complete blood count of cured and dead patients, in order to obtain key indicators of disease progression and outcome and to provide guidance for subsequent clinical practice. Low LYM% is a predictor of prognosis in COVID-19 patients We first randomly selected five death cases and monitored dynamic changes in blood tests for each patient from disease onset to death. Although course of disease in each patient was different, inter-day variations of most parameters studied are fairly constant among all five patients (Supplementary Fig. S1a–f). Among all parameters, blood lymphocyte percentage (LYM%) showed the most significant and consistent trend (Supplementary Fig. S1f), suggesting that this indicator might reflect the disease progression. To further confirm the relationship between blood LYM% and patient’s condition, we increased our sample size to 12 death cases (mean age: 76 years; average therapeutic time: 20 days) (Supplementary Table S1). Most cases showed that LYM% was reduced to lower than 5% within 2 weeks after disease onset (Supplementary Fig. S2a). We also randomly selected seven cases (mean age: 35 years, average therapeutic time: 35 days) with severe symptoms and treatment outcomes (Supplementary Table S2) and 11 cases (mean age: 49; average therapeutic time: 26 days) with moderate symptoms and treatment outcomes (Supplementary Table S3). LYM% of severe patients decreased initially and then increased to higher than 10% until discharged (Supplementary Fig. S2b). In contrast, LYM% of moderate patients fluctuated very little after disease onset and was higher than 20% when discharged (Supplementary Fig. S2c). These results suggest that lymphopenia is a predictor of prognosis in COVID-19 patients. Establishment of a Time-LYM% model from discharged COVID-19 patients By summarizing all the death and cured cases in our hospital to depict the time-LYM% curve (Fig. 1a), we established a Time-LYM% model (TLM) for disease classification and prognosis prediction (Fig. 1b). We defined TLM as follows: patients have varying LYM% after the onset of COVID-19. At the 1st time point (TLM-1) of 10–12 days after symptom onset, patients with LYM% > 20% are classified as moderate type and can recover quickly. Patients with LYM%  20% are in recovery; patients with 5%  20% at TLM-1 are classified as moderate type and the ones with LYM%  20% at TLM-2, those pre-severe patients are reclassified as moderate. If 5% < LYM% < 20% at TLM-2, the pre-severe patients are indeed typed as severe. If LYM% < 5% at TLM-2, those patients are suggested as critically ill. The moderate and severe types are curable, while the critically ill types need intensive care has a poor prognosis. c Ninety COVID-19 patients were currently hospitalized in light of the classification criteria of the New Coronavirus Pneumonia Diagnosis Program (5th edition): 55 patients with moderate type, 24 patients with severe type and 11 patients with critically ill type. At TLM-1, LYM% in 24 out of 55 moderate cases was lower than 20%; At TLM-2, LYM% in all 24 patients was above 5%, indicating that these patients would be curable. Regarding other 24 patients with severe symptoms, LYM% at TLM-1 was lower than 20% in 20 out of 24 cases. LYM% at TLM-2 in 6 cases was <5%, indicating a poor prognosis. In 11 out of 11 critically ill patients, LYM% at TLM-1 was lower than 20%. LYM% at TLM-2 in six cases was lower than 5%, suggesting a poor prognosis. d The consistency between Guideline and TLM-based disease classification in c was tested using kappa statistic. Kappa = 0.48; P < 0.005 Validation of TLM in disease classification in hospitalized COVID-19 patients To validate the reliability of TLM, 90 hospitalized COVID-19 patients typed by the latest classification guideline (5th edition) were redefined with TLM. LYM% in 24 out of 55 moderate cases was lower than 20% at TLM-1; LYM% of all these patients was above 5% at TLM-2, indicating that these patients would recover soon. LYM% at TLM-1 was lower than 20% in 20 out of 24 severe cases; LYM% at TLM-2 was <5% in six cases, indicating a poor prognosis. LYM% at TLM-1 in 11 out of 11 critically ill patients was lower than 20%; LYM% of these patients at TLM-2 was lower than 5% in six cases, suggesting a poor outcome (Fig. 1c). Furthermore, with kappa statistic test, we verified the consistency between TLM and the existing guideline in disease typing (Fig. 1d). LYM% indicates disease severity of COVID-19 patients The classification of disease severity in COVID-19 is very important for the grading treatment of patients. In particular, when the outbreak of an epidemic occurs and medical resources are relatively scarce, it is necessary to conduct grading severity and treatment, thereby optimize the allocation of rescue resources and prevent the occurrence of overtreatment or undertreatment. According to the latest 5th edition of the national treatment guideline, COVID-19 can be classified into four types. Pulmonary imaging is the main basis of classification, and other auxiliary examinations are used to distinguish the severity. Blood tests are easy, fast, and cost-effective. However, none of the indicators in blood tests were included in the classification criteria. This study suggested that LYM% can be used as a reliable indicator to classify the moderate, severe, and critical ill types independent of any other auxiliary indicators. Analysis of possible reasons for lymphopenia in COVID-19 patients Lymphocytes play a decisive role in maintaining immune homeostasis and inflammatory response throughout the body. Understanding the mechanism of reduced blood lymphocyte levels is expected to provide an effective strategy for the treatment of COVID-19. We speculated four potential mechanisms leading to lymphocyte deficiency. (1) The virus might directly infect lymphocytes, resulting in lymphocyte death. Lymphocytes express the coronavirus receptor ACE2 and may be a direct target of viruses. 5 (2) The virus might directly destroy lymphatic organs. Acute lymphocyte decline might be related to lymphocytic dysfunction, and the direct damage of novel coronavirus virus to organs such as thymus and spleen cannot be ruled out. This hypothesis needs to be confirmed by pathological dissection in the future. (3) Inflammatory cytokines continued to be disordered, perhaps leading to lymphocyte apoptosis. Basic researches confirmed that tumour necrosis factor (TNF)α, interleukin (IL)-6, and other pro-inflammatory cytokines could induce lymphocyte deficiency. 6 (4) Inhibition of lymphocytes by metabolic molecules produced by metabolic disorders, such as hyperlactic acidemia. The severe type of COVID-19 patients had elevated blood lactic acid levels, which might suppress the proliferation of lymphocytes. 7 Multiple mechanisms mentioned above or beyond might work together to cause lymphopenia, and further research is needed. In conclusion, lymphopenia is an effective and reliable indicator of the severity and hospitalization in COVID-19 patients. We suggest that TLM should be included in the diagnosis and therapeutic guidelines of COVID-19. Supplementary information Supplementary information
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              Cytokine Storm in COVID-19: The Current Evidence and Treatment Strategies

              Severe acute respiratory syndrome coronavirus 2 (SARS-Cov-2) is the pathogen that causes coronavirus disease 2019 (COVID-19). As of 25 May 2020, the outbreak of COVID-19 has caused 347,192 deaths around the world. The current evidence showed that severely ill patients tend to have a high concentration of pro-inflammatory cytokines, such as interleukin (IL)-6, compared to those who are moderately ill. The high level of cytokines also indicates a poor prognosis in COVID-19. Besides, excessive infiltration of pro-inflammatory cells, mainly involving macrophages and T-helper 17 cells, has been found in lung tissues of patients with COVID-19 by postmortem examination. Recently, increasing studies indicate that the “cytokine storm” may contribute to the mortality of COVID-19. Here, we summarize the clinical and pathologic features of the cytokine storm in COVID-19. Our review shows that SARS-Cov-2 selectively induces a high level of IL-6 and results in the exhaustion of lymphocytes. The current evidence indicates that tocilizumab, an IL-6 inhibitor, is relatively effective and safe. Besides, corticosteroids, programmed cell death protein (PD)-1/PD-L1 checkpoint inhibition, cytokine-adsorption devices, intravenous immunoglobulin, and antimalarial agents could be potentially useful and reliable approaches to counteract cytokine storm in COVID-19 patients.
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                Author and article information

                Journal
                J Inflamm Res
                J Inflamm Res
                jir
                Journal of Inflammation Research
                Dove
                1178-7031
                27 November 2021
                2021
                : 14
                : 6293-6303
                Affiliations
                [1 ]Department of Clinical Pathology, Faculty of Medicine, Ain Shams University , Cairo, Egypt
                [2 ]Department of Pulmonary Medicine, Faculty of Medicine, Ain Shams University , Cairo, Egypt
                [3 ]Department of Microbiology and Immunology, Faculty of Medicine, Zagazig University , Zagazig, Egypt
                [4 ]Department of Internal Medicine/Allergy and Clinical Immunology, Faculty of Medicine, Ain Shams University , Cairo, Egypt
                [5 ]Department of Anesthesia and Intensive Care, Faculty of Medicine, Ain Shams University , Cairo, Egypt
                [6 ]Department of Community, Environmental and Occupational Medicine, Faculty of Medicine Ain Shams University , Cairo, Egypt
                [7 ]Department of Basic Medical Science, Faculty of Medicine, Dar Al Uloom University , Riyadh, Saudi Arabia
                [8 ]Department of Microbiology and Immunology, Faculty of Medicine, Ain Shams University , Cairo, Egypt
                [9 ]Department of Internal Medicine/Hematology, Faculty of Medicine, Ain Shams University , Cairo, Egypt
                Author notes
                Correspondence: Sara I Taha Department of Clinical Pathology, Faculty of Medicine, Ain Shams University , Abassia, Cairo, Egypt Tel + 20 1125360009 Fax + 20 2 24346308 Email dr_sara_ib@med.asu.edu.eg
                Author information
                http://orcid.org/0000-0001-8224-8701
                http://orcid.org/0000-0002-2188-6790
                http://orcid.org/0000-0003-4052-9454
                Article
                343246
                10.2147/JIR.S343246
                8636845
                34866927
                90cc3667-8553-4117-8d77-606a308b70ad
                © 2021 Taha et al.

                This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License ( http://creativecommons.org/licenses/by-nc/3.0/). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms ( https://www.dovepress.com/terms.php).

                History
                : 07 October 2021
                : 17 November 2021
                Page count
                Figures: 3, Tables: 6, References: 39, Pages: 11
                Funding
                Funded by: did not receive any financial support to research, author and/or publish this article;
                The authors did not receive any financial support to research, author and/or publish this article.
                Categories
                Original Research

                Immunology
                covid-19,egypt,mortality,polymorphism,severity,toll-like receptor
                Immunology
                covid-19, egypt, mortality, polymorphism, severity, toll-like receptor

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