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      Radio-pathomic approaches in pediatric neuro-oncology: Opportunities and challenges

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          Abstract

          With medical software platforms moving to cloud environments with scalable storage and computing, the translation of predictive artificial intelligence (AI) models to aid in clinical decision-making and facilitate personalized medicine for cancer patients is becoming a reality. Medical imaging, namely radiologic and histologic images, has immense analytical potential in neuro-oncology, and models utilizing integrated radiomic and pathomic data may yield a synergistic effect and provide a new modality for precision medicine. At the same time, the ability to harness multi-modal data is met with challenges in aggregating data across medical departments and institutions, as well as significant complexity in modeling the phenotypic and genotypic heterogeneity of pediatric brain tumors. In this paper, we review recent pathomic and integrated pathomic, radiomic, and genomic studies with clinical applications. We discuss current challenges limiting translational research on pediatric brain tumors and outline technical and analytical solutions. Overall, we propose that to empower the potential residing in radio-pathomics, systemic changes in cross-discipline data management and end-to-end software platforms to handle multi-modal data sets are needed, in addition to embracing modern AI-powered approaches. These changes can improve the performance of predictive models, and ultimately the ability to advance brain cancer treatments and patient outcomes through the development of such models.

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          The 2021 WHO Classification of Tumors of the Central Nervous System: a summary

          The fifth edition of the WHO Classification of Tumors of the Central Nervous System (CNS), published in 2021, is the sixth version of the international standard for the classification of brain and spinal cord tumors. Building on the 2016 updated fourth edition and the work of the Consortium to Inform Molecular and Practical Approaches to CNS Tumor Taxonomy, the 2021 fifth edition introduces major changes that advance the role of molecular diagnostics in CNS tumor classification. At the same time, it remains wedded to other established approaches to tumor diagnosis such as histology and immunohistochemistry. In doing so, the fifth edition establishes some different approaches to both CNS tumor nomenclature and grading and it emphasizes the importance of integrated diagnoses and layered reports. New tumor types and subtypes are introduced, some based on novel diagnostic technologies such as DNA methylome profiling. The present review summarizes the major general changes in the 2021 fifth edition classification and the specific changes in each taxonomic category. It is hoped that this summary provides an overview to facilitate more in-depth exploration of the entire fifth edition of the WHO Classification of Tumors of the Central Nervous System.
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            QuPath: Open source software for digital pathology image analysis

            QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensive panel of tumor identification and high-throughput biomarker evaluation tools, QuPath provides researchers with powerful batch-processing and scripting functionality, and an extensible platform with which to develop and share new algorithms to analyze complex tissue images. Furthermore, QuPath’s flexible design makes it suitable for a wide range of additional image analysis applications across biomedical research.
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              Radiomics: Images Are More than Pictures, They Are Data

              This report describes the process of radiomics, its challenges, and its potential power to facilitate better clinical decision making, particularly in the care of patients with cancer.
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                Author and article information

                Contributors
                Journal
                Neurooncol Adv
                Neurooncol Adv
                noa
                Neuro-Oncology Advances
                Oxford University Press (US )
                2632-2498
                Jan-Dec 2023
                13 September 2023
                13 September 2023
                : 5
                : 1
                : vdad119
                Affiliations
                Center for Data-Driven Discovery in Biomedicine, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Center for Data-Driven Discovery in Biomedicine, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Department of Neurosurgery, Thomas Jefferson University Hospital , Philadelphia, PA, USA
                Center for Data-Driven Discovery in Biomedicine, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Department of Neurosurgery, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania , Philadelphia, PA, USA
                Center for Data-Driven Discovery in Biomedicine, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Department of Radiology, Perelman School of Medicine, University of Pennsylvania , Philadelphia, PA, USA
                Center for Data-Driven Discovery in Biomedicine, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Department of Radiology, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Department of Radiology, Perelman School of Medicine, University of Pennsylvania , Philadelphia, PA, USA
                Department of Pathology and Laboratory Medicine, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania , Philadelphia, PA, USA
                Center for Data-Driven Discovery in Biomedicine, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Department of Neurosurgery, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania , Philadelphia, PA, USA
                Center for Data-Driven Discovery in Biomedicine, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Department of Neurosurgery, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Center for Data-Driven Discovery in Biomedicine, Children’s Hospital of Philadelphia , Philadelphia, PA, USA
                Department of Radiology, Perelman School of Medicine, University of Pennsylvania , Philadelphia, PA, USA
                Author notes
                Corresponding Author: Ali Nabavizadeh, MD, Division of Neuroradiology, Department of Radiology, 219 Dulles Building, 3400 Spruce Street, Philadelphia, PA 19104, USA ( ali.nabavizadeh@ 123456pennmedicine.upenn.edu ).

                Ariana M. Familiar and Aria Mahtabfar These authors are co-first authors and contributed equally to this work.

                Author information
                https://orcid.org/0000-0002-0380-4552
                Article
                vdad119
                10.1093/noajnl/vdad119
                10576517
                37841693
                8af45c75-dc60-4631-82b0-504b92976e10
                © The Author(s) 2023. Published by Oxford University Press, the Society for Neuro-Oncology and the European Association of Neuro-Oncology.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License ( https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

                History
                : 14 October 2023
                Page count
                Pages: 15
                Funding
                Funded by: NIH, DOI 10.13039/100000002;
                Funded by: NCI, DOI 10.13039/100000054;
                Award ID: 75N91019D00024
                Funded by: Childhood Cancer Data Initiative;
                Award ID: 75N91019D00024
                Categories
                Review
                AcademicSubjects/MED00300
                AcademicSubjects/MED00310

                neuro-oncology,pathomics,pediatrics,radiomics,radio-pathomics

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