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      Soil texture and microorganisms dominantly determine the subsoil carbonate content in the permafrost-affected area of the Tibetan Plateau

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          Abstract

          Under climate warming conditions, storage and conversion of soil inorganic carbon ( SIC) play an important role in regulating soil carbon (C) dynamics and atmospheric CO 2 content in arid and semi-arid areas. Carbonate formation in alkaline soil can fix a large amount of C in the form of inorganic C, resulting in soil C sink and potentially slowing global warming trends. Therefore, understanding the driving factors affecting carbonate mineral formation can help better predict future climate change. Till date, most studies have focused on abiotic drivers (climate and soil), whereas a few examined the effects of biotic drivers on carbonate formation and SIC stock. In this study, SIC, calcite content, and soil microbial communities were analyzed in three soil layers (0–5 cm, 20–30 cm, and 50–60 cm) on the Beiluhe Basin of Tibetan Plateau. Results revealed that in arid and semi-arid areas, SIC and soil calcite content did not exhibit significant differences among the three soil layers; however, the main factors affecting the calcite content in different soil layers are different. In the topsoil (0–5 cm), the most important predictor of calcite content was soil water content. In the subsoil layers 20–30 cm and 50–60 cm, the ratio of bacterial biomass to fungal biomass (B/F) and soil silt content, respectively, had larger contributions to the variation of calcite content than the other factors. Plagioclase provided a site for microbial colonization, whereas Ca 2+ contributed in bacteria-mediated calcite formation. This study aims to highlight the importance of soil microorganisms in managing soil calcite content and reveals preliminary results on bacteria-mediated conversion of organic to inorganic C.

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          Structure and function of the global topsoil microbiome

          Soils harbour some of the most diverse microbiomes on Earth and are essential for both nutrient cycling and carbon storage. To understand soil functioning, it is necessary to model the global distribution patterns and functional gene repertoires of soil microorganisms, as well as the biotic and environmental associations between the diversity and structure of both bacterial and fungal soil communities1-4. Here we show, by leveraging metagenomics and metabarcoding of global topsoil samples (189 sites, 7,560 subsamples), that bacterial, but not fungal, genetic diversity is highest in temperate habitats and that microbial gene composition varies more strongly with environmental variables than with geographic distance. We demonstrate that fungi and bacteria show global niche differentiation that is associated with contrasting diversity responses to precipitation and soil pH. Furthermore, we provide evidence for strong bacterial-fungal antagonism, inferred from antibiotic-resistance genes, in topsoil and ocean habitats, indicating the substantial role of biotic interactions in shaping microbial communities. Our results suggest that both competition and environmental filtering affect the abundance, composition and encoded gene functions of bacterial and fungal communities, indicating that the relative contributions of these microorganisms to global nutrient cycling varies spatially.
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            The global carbon dioxide flux in soil respiration and its relationship to vegetation and climate

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              Extinction risk from climate change.

              Climate change over the past approximately 30 years has produced numerous shifts in the distributions and abundances of species and has been implicated in one species-level extinction. Using projections of species' distributions for future climate scenarios, we assess extinction risks for sample regions that cover some 20% of the Earth's terrestrial surface. Exploring three approaches in which the estimated probability of extinction shows a power-law relationship with geographical range size, we predict, on the basis of mid-range climate-warming scenarios for 2050, that 15-37% of species in our sample of regions and taxa will be 'committed to extinction'. When the average of the three methods and two dispersal scenarios is taken, minimal climate-warming scenarios produce lower projections of species committed to extinction ( approximately 18%) than mid-range ( approximately 24%) and maximum-change ( approximately 35%) scenarios. These estimates show the importance of rapid implementation of technologies to decrease greenhouse gas emissions and strategies for carbon sequestration.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                21 March 2023
                2023
                : 14
                : 1125832
                Affiliations
                [1] 1Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences (CAS) , Lanzhou, China
                [2] 2University of Chinese Academy of Sciences , Beijing, China
                [3] 3State Key Laboratory of Frozen Soil Engineering, BeiLu’He Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences (CAS) , Lanzhou, China
                [4] 4Department of Geosciences and Natural Resource Management, Center for Permafrost (CENPERM), University of Copenhagen , Copenhagen, Denmark
                [5] 5Department of Earth, Atmospheric and Planetary Sciences, Purdue University , West Lafayette, IN, United States
                Author notes

                Edited by: Danielle Fortin, University of Ottawa, Canada

                Reviewed by: Gengxin Zhang, Institute of Tibetan Plateau Research (CAS), China; Anzhou Ma, Research Center for Eco-Environmental Sciences (CAS), China

                *Correspondence: Tianzhu Lei, leitianzhu@ 123456163.com

                This article was submitted to Microbiological Chemistry and Geomicrobiology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2023.1125832
                10070835
                8aed712f-bfa7-4cc5-80fd-8d72fdaeff9f
                Copyright © 2023 Shao, Zhang, Pei, Song, Lei and Yun.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 16 December 2022
                : 06 March 2023
                Page count
                Figures: 7, Tables: 1, Equations: 0, References: 73, Pages: 10, Words: 7581
                Funding
                Funded by: National Natural Science Foundation of China, doi 10.13039/501100001809;
                This work was supported by the National Natural Science Foundation of China (Grant Nos. 41072107 and 42002174), the Natural Science Foundation of Gansu Province, China (Grant No. 20JR10RA030), and the Second Tibetan Plateau Scientific Expedition and Research Program (Grant No. 2019QZKK0305).
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                soil carbon dynamic,soil texture,microorganisms,pedogenic carbonate minerals,alkaline permafrost regions,tibetan plateau

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