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      New records of the dolphin Albertocetus meffordorum (Odontoceti: Xenorophidae) from the lower Oligocene of South Carolina: Encephalization, sensory anatomy, postcranial morphology, and ontogeny of early odontocetes

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          Abstract

          We report five new specimens of xenorophid dolphins from North and South Carolina. Four of the specimens represent the xenorophid Albertocetus meffordorum, previously only known from the holotype skull. The other is a fragmentary petrosal from the upper Oligocene Belgrade Formation that we refer to Echovenator sp, indicating at least two xenorophids from that unit. Two of the Albertocetus meffordorum specimens are from the lower Oligocene Ashley Formation: 1) a partial skeleton with neurocranium, fragmentary mandible, ribs, vertebrae, and chevrons, and 2) an isolated braincase. The partial vertebral column indicates that Albertocetus retained the ancestral morphology and locomotory capabilities of basilosaurid archaeocetes, toothed mysticetes, and physeteroids, and caudal vertebrae that are as wide as tall suggest that the caudal peduncle, which occurs in all extant Cetacea, was either wide or lacking. CT data from the isolated braincase were used to generate a digital endocast of the cranial cavity. The estimated EQ of this specimen is relatively high for an Oligocene odontocete, and other aspects of the brain, such as its anteroposterior length and relative size of the temporal lobe, are intermediate in morphology between those of extant cetaceans and terrestrial artiodactyls. Ethmoturbinals are also preserved, and are similar in morphology and number to those described for the Miocene odontocete Squalodon. These fossils extend the temporal range of Albertocetus meffordorum into the early Oligocene, its geographic range into South Carolina, and expand our paleobiological understanding of the Xenorophidae.

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          The therian skull : a lexicon with emphasis on the odontocetes

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            Phylogenomic reconstruction of lactic acid bacteria: an update

            Background Lactic acid bacteria (LAB) are important in the food industry for the production of fermented food products and in human health as commensals in the gut. However, the phylogenetic relationships among LAB species remain under intensive debate owing to disagreements among different data sets. Results We performed a phylogenetic analysis of LAB species based on 232 genes from 28 LAB genome sequences. Regardless of the tree-building methods used, combined analyses yielded an identical, well-resolved tree topology with strong supports for all nodes. The LAB species examined were divided into two groups. Group 1 included families Enterococcaceae and Streptococcaceae. Group 2 included families Lactobacillaceae and Leuconostocaceae. Within Group 2, the LAB species were divided into two clades. One clade comprised of the acidophilus complex of genus Lactobacillus and two other species, Lb. sakei and Lb. casei. In the acidophilus complex, Lb. delbrueckii separated first, while Lb. acidophilus/Lb. helveticus and Lb. gasseri/Lb. johnsonii were clustered into a sister group. The other clade within Group 2 consisted of the salivarius subgroup, including five species, Lb. salivarius, Lb. plantarum, Lb. brevis, Lb. reuteri, Lb. fermentum, and the genera Pediococcus, Oenococcus, and Leuconostoc. In this clade, Lb. salivarius was positioned most basally, followed by two clusters, one corresponding to Lb. plantarum/Lb. brevis pair and Pediococcus, and the other including Oenococcus/Leuconostoc pair and Lb. reuteri/Lb. fermentum pair. In addition, phylogenetic utility of the 232 genes was analyzed to identify those that may be more useful than others. The genes identified as useful were related to translation and ribosomal structure and biogenesis (TRSB), and a three-gene set comprising genes encoding ultra-violet resistance protein B (uvrB), DNA polymerase III (polC) and penicillin binding protein 2B (pbpB). Conclusions Our phylogenomic analyses provide important insights into the evolution and diversification of LAB species, and also revealed the phylogenetic utility of several genes. We infer that the occurrence of multiple, independent adaptation events in LAB species, have resulted in their occupation of various habitats. Further analyses of more genes from additional, representative LAB species are needed to reveal the molecular mechanisms underlying adaptation of LAB species to various environmental niches.
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              Reconstructing Body Size in Extinct Crown Cetacea (Neoceti) Using Allometry, Phylogenetic Methods and Tests from the Fossil Record

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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – original draftRole: Writing – review & editing
                Role: Formal analysisRole: Investigation
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                8 November 2017
                2017
                : 12
                : 11
                : e0186476
                Affiliations
                [1 ] Department of Geology and Environmental Geosciences, College of Charleston, Charleston, South Carolina, United States of America
                [2 ] University of California Museum of Paleontology, University of California, Berkeley, California, United States of America
                [3 ] Department of Anatomy, New York Institute of Technology College of Osteopathic Medicine, Old Westbury, New York, United States of America
                Medical University of South Carolina, UNITED STATES
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-6117-128X
                Article
                PONE-D-17-09780
                10.1371/journal.pone.0186476
                5695589
                29117197
                85457a52-9896-4097-811d-2edd62671c89
                © 2017 Boessenecker et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 12 March 2017
                : 2 October 2017
                Page count
                Figures: 17, Tables: 5, Pages: 34
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100000001, National Science Foundation;
                Award ID: NSF-DEB 0640361
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000001, National Science Foundation;
                Award ID: NSF-EAR 1349607
                Award Recipient :
                This work was supported by National Science Foundation DEB 0640361 JHG and National Science Foundation EAR 1349607 JHG. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Anatomy
                Musculoskeletal System
                Spine
                Vertebrae
                Medicine and Health Sciences
                Anatomy
                Musculoskeletal System
                Spine
                Vertebrae
                Earth Sciences
                Geology
                Geologic Time
                Cenozoic Era
                Paleogene Period
                Oligocene Epoch
                Biology and Life Sciences
                Anatomy
                Bone
                Epiphyses
                Medicine and Health Sciences
                Anatomy
                Bone
                Epiphyses
                Biology and Life Sciences
                Anatomy
                Biological Tissue
                Connective Tissue
                Bone
                Epiphyses
                Medicine and Health Sciences
                Anatomy
                Biological Tissue
                Connective Tissue
                Bone
                Epiphyses
                Biology and Life Sciences
                Anatomy
                Osteology
                Medicine and Health Sciences
                Anatomy
                Osteology
                Biology and Life Sciences
                Anatomy
                Musculoskeletal System
                Skeleton
                Maxilla
                Medicine and Health Sciences
                Anatomy
                Musculoskeletal System
                Skeleton
                Maxilla
                Biology and Life Sciences
                Anatomy
                Musculoskeletal System
                Spine
                Medicine and Health Sciences
                Anatomy
                Musculoskeletal System
                Spine
                Biology and Life Sciences
                Anatomy
                Musculoskeletal System
                Skeleton
                Ribs
                Medicine and Health Sciences
                Anatomy
                Musculoskeletal System
                Skeleton
                Ribs
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Vertebrates
                Fish
                Chondrichthyes
                Elasmobranchii
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                Custom metadata
                All relevant data are within the paper and collections at CCNHM (Mace Brown Museum of Natural History, College of Charleston, Charleston, SC, USA).

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