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      Teleost IgD +IgM B Cells Mount Clonally Expanded and Mildly Mutated Intestinal IgD Responses in the Absence of Lymphoid Follicles

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          Summary

          Immunoglobulin D (IgD) is an ancient antibody with dual membrane-bound and fluid-phase antigen receptor functions. The biology of secreted IgD remains elusive. Here, we demonstrate that teleost IgD +IgM plasmablasts constitute a major lymphocyte population in some mucosal surfaces, including the gut mucosa. Remarkably, secreted IgD binds to gut commensal bacteria, which in turn stimulate IgD gene transcription in gut B cells. Accordingly, secreted IgD from gut as well as gill mucosae, but not the spleen, show a V(D)J gene configuration consistent with microbiota-driven clonal expansion and diversification, including mild somatic hypermutation. By showing that secreted IgD establishes a mutualistic relationship with commensals, our findings suggest that secreted IgD may play an evolutionary conserved role in mucosal homeostasis.

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          Highlights

          • IgD +IgM B cells constitute the main non-IgT B cell subset in rainbow trout guts

          • Gut IgD responses establish a two-way interaction with the local microbiota

          • Mucosal but not splenic IgD undergoes clonal expansion and diversification

          • Despite the lack of germinal centers, mucosal IgD is mildly mutated in rainbow trout

          Abstract

          Perdiguero et al. show that IgD +IgM plasmablasts constitute a major lymphocyte population in the teleost intestine, as in gills. In these two tissues, IgD molecular signatures reflect a clonal expansion not detected in the spleen. Finally, secreted IgD in the intestine establishes a two-way interaction with the local microbiota.

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          Most cited references39

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          Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme.

          Induced overexpression of AID in CH12F3-2 B lymphoma cells augmented class switching from IgM to IgA without cytokine stimulation. AID deficiency caused a complete defect in class switching and showed a hyper-IgM phenotype with enlarged germinal centers containing strongly activated B cells before or after immunization. AID-/- spleen cells stimulated in vitro with LPS and cytokines failed to undergo class switch recombination although they expressed germline transcripts. Immunization of AID-/- chimera with 4-hydroxy-3-nitrophenylacetyl (NP) chicken gamma-globulin induced neither accumulation of mutations in the NP-specific variable region gene nor class switching. These results suggest that AID may be involved in regulation or catalysis of the DNA modification step of both class switching and somatic hypermutation.
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            Manipulation of FASTQ data with Galaxy

            Summary: Here, we describe a tool suite that functions on all of the commonly known FASTQ format variants and provides a pipeline for manipulating next generation sequencing data taken from a sequencing machine all the way through the quality filtering steps. Availability and Implementation: This open-source toolset was implemented in Python and has been integrated into the online data analysis platform Galaxy (public web access: http://usegalaxy.org; download: http://getgalaxy.org). Two short movies that highlight the functionality of tools described in this manuscript as well as results from testing components of this tool suite against a set of previously published files are available at http://usegalaxy.org/u/dan/p/fastq Contact: james.taylor@emory.edu; anton@bx.psu.edu Supplementary information: Supplementary data are available at Bioinformatics online.
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              Diversity in the CDR3 region of V(H) is sufficient for most antibody specificities.

              J. Xu, M Davis (2000)
              All rearranging antigen receptor genes have one or two highly diverse complementarity determining regions (CDRs) among the six that typically form the ligand binding surface. We report here that, in the case of antibodies, diversity at one of these regions, CDR3 of the V(H) domain, is sufficient to permit otherwise identical IgM molecules to distinguish between a variety of hapten and protein antigens. Furthermore, we find that somatic mutation can allow such antibodies to achieve surprisingly high affinities. These results are consistent with a model in which the highly diverse CDR3 loops are the key determinant of specificity in antigen recognition in both T cell receptors (TCR) and antibodies, whereas the germline-encoded CDR1 and CDR2 sequences are much more cross-reactive.
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                Author and article information

                Contributors
                Journal
                Cell Rep
                Cell Rep
                Cell Reports
                Cell Press
                2211-1247
                24 December 2019
                24 December 2019
                24 December 2019
                : 29
                : 13
                : 4223-4235.e5
                Affiliations
                [1 ]Animal Health Research Center (CISA-INIA), Valdeolmos, 28130 Madrid, Spain
                [2 ]Catalan Institute for Research and Advanced Studies (ICREA), 08003 Barcelona, Spain
                [3 ]Inflammatory and Cardiovascular Disorders Research Program, Hospital del Mar Medical Research Institute (IMIM), 08003 Barcelona, Spain
                Author notes
                []Corresponding author tafalla@ 123456inia.es
                [4]

                These authors contributed equally

                [5]

                Lead Contact

                Article
                S2211-1247(19)31601-8
                10.1016/j.celrep.2019.11.101
                6941218
                31875534
                83cdd97d-6a92-4d77-994f-037afa495051
                © 2019 The Author(s)

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 24 June 2019
                : 19 October 2019
                : 25 November 2019
                Categories
                Article

                Cell biology
                igd,teleost fish,intestine,gills,microbiota,b cells,clonal expansion,somatic hypermutation,shm
                Cell biology
                igd, teleost fish, intestine, gills, microbiota, b cells, clonal expansion, somatic hypermutation, shm

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