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      Kinetic Model for Signal Binding to the Quorum Sensing Regulator LasR

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          Abstract

          We propose a kinetic model for the activation of the las regulon in the opportunistic pathogen Pseudomonas aeruginosa. The model is based on in vitro data and accounts for the LasR dimerization and consecutive activation by binding of two OdDHL signal molecules. Experimentally, the production of the active LasR quorum-sensing regulator was studied in an Escherichia coli background as a function of signal molecule concentration. The functional activity of the regulator was monitored via a GFP reporter fusion to lasB expressed from the native lasB promoter. The new data shows that the active form of the LasR dimer binds two signal molecules cooperatively and that the timescale for reaching saturation is independent of the signal molecule concentration. This favors a picture where the dimerized regulator is protected against proteases and remains protected as it is activated through binding of two successive signal molecules. In absence of signal molecules, the dimerized regulator can dissociate and degrade through proteolytic turnover of the monomer. This resolves the apparent contradiction between our data and recent reports that the fully protected dimer is able to “degrade” when the induction of LasR ceases.

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          Most cited references26

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          Growth rate-dependent global effects on gene expression in bacteria.

          Bacterial gene expression depends not only on specific regulatory mechanisms, but also on bacterial growth, because important global parameters such as the abundance of RNA polymerases and ribosomes are all growth-rate dependent. Understanding of these global effects is necessary for a quantitative understanding of gene regulation and for the design of synthetic genetic circuits. We find that the observed growth-rate dependence of constitutive gene expression can be explained by a simple model using the measured growth-rate dependence of the relevant cellular parameters. More complex growth dependencies for genetic circuits involving activators, repressors, and feedback control were analyzed and verified experimentally with synthetic circuits. Additional results suggest a feedback mechanism mediated by general growth-dependent effects that does not require explicit gene regulation if the expressed protein affects cell growth. This mechanism can lead to growth bistability and promote the acquisition of important physiological functions such as antibiotic resistance and tolerance (persistence). Copyright 2009 Elsevier Inc. All rights reserved.
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            New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria.

            Use of the green fluorescent protein (Gfp) from the jellyfish Aequorea victoria is a powerful method for nondestructive in situ monitoring, since expression of green fluorescence does not require any substrate addition. To expand the use of Gfp as a reporter protein, new variants have been constructed by the addition of short peptide sequences to the C-terminal end of intact Gfp. This rendered the Gfp susceptible to the action of indigenous housekeeping proteases, resulting in protein variants with half-lives ranging from 40 min to a few hours when synthesized in Escherichia coli and Pseudomonas putida. The new Gfp variants should be useful for in situ studies of temporal gene expression.
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              Census and consensus in bacterial ecosystems: the LuxR-LuxI family of quorum-sensing transcriptional regulators.

              The importance of accurate demographic information is reflected in the United States Constitution, Article 1, which provides for a decennial census of this country's human population. Bacteria also conduct a census of their population and do so more frequently, more efficiently, and as far we know, with little if any of the political contentiousness caused by human demographers. Many examples have been found of particular bacterial genes, operons, or regulons that are expressed preferentially at high cell densities. Many of these are regulated by proteins related to the LuxR and LuxI proteins of Vibrio fischeri, and by a diffusible pheromone called an autoinducer. LuxR and LuxI and their cognate autoinducer (3-oxohexanoyl homoserine lactone, designated VAI-1) provide an important model to describe the functions of this family of proteins. LuxR is a VAI-1 receptor and a VAI-1-dependent transcriptional activator, and LuxI directs the synthesis of VAI-1. VAI-1 diffuses across the bacterial envelope, and intracellular concentrations of it are therefore strongly increased by nearby VAI-1-producing bacteria. Similar systems regulate pathogenesis factors in Pseudomonas aeruginosa and Erwinia spp., as well as T1 plasmid conjugal transfer in Agrobacterium tumefaciens, and many other genes in numerous genera of gram-negative bacteria. Genetic analyses of these systems have revealed a high degree of functional conservation, while also uncovering features that are unique to each.
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                Author and article information

                Journal
                Int J Mol Sci
                Int J Mol Sci
                ijms
                International Journal of Molecular Sciences
                Molecular Diversity Preservation International (MDPI)
                1422-0067
                July 2013
                27 June 2013
                : 14
                : 7
                : 13360-13376
                Affiliations
                [1 ]Biomedical Engineering, Department of Electrical Engineering, Ørsteds Plads 349, Technical University of Denmark, Kongens Lyngby DK-2800, Denmark; E-Mail: anetta.claussen@ 123456gmail.com
                [2 ]Costerton Biofilm Center, Department of International Health, Immunology, and Microbiology, Panum Institute, University of Copenhagen, Blegdamsvej 3B, Copenhagen DK-2200, Denmark; E-Mails: tholm@ 123456sund.ku.dk (T.H.J.); tbjarnsholt@ 123456sund.ku.dk (T.B.); mgivskov@ 123456sund.ku.dk (M.G.)
                [3 ]Singapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University, Singapore 637551, Singapore
                [4 ]Department of Biochemistry, University of Cambridge, Hopkins Building, Downing Site, Cambridge CB2 1QW, UK; E-Mail: mw240@ 123456cam.ac.uk
                [5 ]Center for Biological Sequence Analysis, Department of Systems Biology, Building 301, Technical University of Denmark, Kongens Lyngby DK-2800, Denmark; E-Mail: jesperfb@ 123456cbs.dtu.dk
                Author notes
                [* ]Author to whom correspondence should be addressed; E-Mail: tsams@ 123456dtu.dk ; Tel.: +45-4525-5725; Fax: +45-4588-0117.
                Article
                ijms-14-13360
                10.3390/ijms140713360
                3742191
                23807499
                81c8f58b-1dde-4a5a-b317-48815a5124e2
                © 2013 by the authors; licensee MDPI, Basel, Switzerland

                This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license ( http://creativecommons.org/licenses/by/3.0/).

                History
                : 03 June 2013
                : 19 June 2013
                : 20 June 2013
                Categories
                Article

                Molecular biology
                quorum sensing,lasr,pseudomonas aeruginosa,oddhl,c12-hsl,signal molecule,ligand
                Molecular biology
                quorum sensing, lasr, pseudomonas aeruginosa, oddhl, c12-hsl, signal molecule, ligand

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