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      Harnessing rhizospheric core microbiomes from arid regions for enhancing date palm resilience to climate change effects

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          Abstract

          Date palm cultivation has thrived in the Gulf Cooperation Council region since ancient times, where it represents a vital sector in agricultural and socio-economic development. However, climate change conditions prevailing for decades in this area, next to rarefication of rain, hot temperatures, intense evapotranspiration, rise of sea level, salinization of groundwater, and intensification of cultivation, contributed to increase salinity in the soil as well as in irrigation water and to seriously threaten date palm cultivation sustainability. There are also growing concerns about soil erosion and its repercussions on date palm oases. While several reviews have reported on solutions to sustain date productivity, including genetic selection of suitable cultivars for the local harsh environmental conditions and the implementation of efficient management practices, no systematic review of the desertic plants’ below-ground microbial communities and their potential contributions to date palm adaptation to climate change has been reported yet. Indeed, desert microorganisms are expected to address critical agricultural challenges and economic issues. Therefore, the primary objectives of the present critical review are to (1) analyze and synthesize current knowledge and scientific advances on desert plant-associated microorganisms, (2) review and summarize the impacts of their application on date palm, and (3) identify possible gaps and suggest relevant guidance for desert plant microbes’ inoculation approach to sustain date palm cultivation within the Gulf Cooperation Council in general and in Qatar in particular.

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          The role of root exudates in rhizosphere interactions with plants and other organisms.

          The rhizosphere encompasses the millimeters of soil surrounding a plant root where complex biological and ecological processes occur. This review describes recent advances in elucidating the role of root exudates in interactions between plant roots and other plants, microbes, and nematodes present in the rhizosphere. Evidence indicating that root exudates may take part in the signaling events that initiate the execution of these interactions is also presented. Various positive and negative plant-plant and plant-microbe interactions are highlighted and described from the molecular to the ecosystem scale. Furthermore, methodologies to address these interactions under laboratory conditions are presented.
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            The importance of the microbiome of the plant holobiont.

            Plants can no longer be considered as standalone entities and a more holistic perception is needed. Indeed, plants harbor a wide diversity of microorganisms both inside and outside their tissues, in the endosphere and ectosphere, respectively. These microorganisms, which mostly belong to Bacteria and Fungi, are involved in major functions such as plant nutrition and plant resistance to biotic and abiotic stresses. Hence, the microbiota impact plant growth and survival, two key components of fitness. Plant fitness is therefore a consequence of the plant per se and its microbiota, which collectively form a holobiont. Complementary to the reductionist perception of evolutionary pressures acting on plant or symbiotic compartments, the plant holobiont concept requires a novel perception of evolution. The interlinkages between the plant holobiont components are explored here in the light of current ecological and evolutionary theories. Microbiome complexity and the rules of microbiotic community assemblage are not yet fully understood. It is suggested that the plant can modulate its microbiota to dynamically adjust to its environment. To better understand the level of plant dependence on the microbiotic components, the core microbiota need to be determined at different hierarchical scales of ecology while pan-microbiome analyses would improve characterization of the functions displayed. © 2015 The Authors New Phytologist © 2015 New Phytologist Trust.
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              Plant growth-promoting rhizobacteria and root system functioning

              The rhizosphere supports the development and activity of a huge and diversified microbial community, including microorganisms capable to promote plant growth. Among the latter, plant growth-promoting rhizobacteria (PGPR) colonize roots of monocots and dicots, and enhance plant growth by direct and indirect mechanisms. Modification of root system architecture by PGPR implicates the production of phytohormones and other signals that lead, mostly, to enhanced lateral root branching and development of root hairs. PGPR also modify root functioning, improve plant nutrition and influence the physiology of the whole plant. Recent results provided first clues as to how PGPR signals could trigger these plant responses. Whether local and/or systemic, the plant molecular pathways involved remain often unknown. From an ecological point of view, it emerged that PGPR form coherent functional groups, whose rhizosphere ecology is influenced by a myriad of abiotic and biotic factors in natural and agricultural soils, and these factors can in turn modulate PGPR effects on roots. In this paper, we address novel knowledge and gaps on PGPR modes of action and signals, and highlight recent progress on the links between plant morphological and physiological effects induced by PGPR. We also show the importance of taking into account the size, diversity, and gene expression patterns of PGPR assemblages in the rhizosphere to better understand their impact on plant growth and functioning. Integrating mechanistic and ecological knowledge on PGPR populations in soil will be a prerequisite to develop novel management strategies for sustainable agriculture.
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                Author and article information

                Contributors
                URI : https://loop.frontiersin.org/people/1883626/overviewRole: Role: Role: Role: Role: Role: Role: Role:
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                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                05 April 2024
                2024
                : 15
                : 1362722
                Affiliations
                [1] 1Center for Sustainable Development, College of Arts and Sciences, Qatar University , Doha, Qatar
                [2] 2Laboratory of Plant Molecular Physiology, Centre of Biotechnology of Borj-Cedria , Hammam-Lif, Tunisia
                [3] 3Higher Institute of Biotechnology of Monastir, University of Monastir , Monastir, Tunisia
                [4] 4Environmental Science Center, Qatar University , Doha, Qatar
                [5] 5Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University , Doha, Qatar
                [6] 6Agricultural Research Station, Office of VP for Research and Graduate Studies, Qatar University , Doha, Qatar
                Author notes

                Edited by: James T. Tambong, Agriculture and Agri-Food Canada (AAFC), Canada

                Reviewed by: Nagaraju Yalavarthi, Central Silk Board, India

                Guillaume J. Bilodeau, Canadian Food Inspection Agency (CFIA), Canada

                *Correspondence: Ameni Ben Zineb, amenybenzineb@ 123456gmail.com

                Present address: Mahmoud Gargouri, Institute of Biological Chemistry, Washington State University, Pullman, WA, United States

                Article
                10.3389/fmicb.2024.1362722
                11027745
                38646634
                81673728-196d-49ea-9430-99112edc4740
                Copyright © 2024 Ben Zineb, Lamine, Khallef, Hamdi, Ahmed, Al-Jabri, Alsafran, Mliki, Sayadi and Gargouri.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 28 December 2023
                : 11 March 2024
                Page count
                Figures: 2, Tables: 1, Equations: 0, References: 126, Pages: 14, Words: 11769
                Funding
                The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This publication was made possible by the QNRF-MME award (MME03-1120-210024) from the Qatar National Research Fund (a member of the Qatar Foundation). The findings are solely the responsibility of the authors.
                Categories
                Microbiology
                Review
                Custom metadata
                Microbe and Virus Interactions with Plants

                Microbiology & Virology
                date palm,desert plant microbes,sustainability,biofertilizers,gcc
                Microbiology & Virology
                date palm, desert plant microbes, sustainability, biofertilizers, gcc

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