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      Noncanonical Fungal Autophagy Inhibits Inflammation in Response to IFN-γ via DAPK1

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          Summary

          Defects in a form of noncanonical autophagy, known as LC3-associated phagocytosis (LAP), lead to increased inflammatory pathology during fungal infection. Although LAP contributes to fungal degradation, the molecular mechanisms underlying LAP-mediated modulation of inflammation are unknown. We describe a mechanism by which inflammation is regulated during LAP through the death-associated protein kinase 1 (DAPK1). The ATF6/C/EBP-β/DAPK1 axis activated by IFN-γ not only mediates LAP to Aspergillus fumigatus but also concomitantly inhibits Nod-like receptor protein 3 (NLRP3) activation and restrains pathogenic inflammation. In mouse models and patient samples of chronic granulomatous disease, which exhibit defective autophagy and increased inflammasome activity, IFN-γ restores reduced DAPK1 activity and dampens fungal growth. Additionally, in a cohort of hematopoietic stem cell-transplanted patients, a genetic DAPK1 deficiency is associated with increased inflammation and heightened aspergillosis susceptibility. Thus, DAPK1 is a potential drugable player in regulating the inflammatory response during fungal clearance initiated by IFN-γ.

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          Highlights

          • IFN-γ restrains inflammation during fungal clearance via DAPK1

          • DAPK1 promotes noncanonical autophagy and NLRP3 proteasomal degradation

          • DAPK1 deficiency predicts infection and inflammation in CGD or transplanted patients

          • IFN-γ therapy restores defective DAPK1

          Abstract

          Defects in noncanonical autophagy increase inflammatory pathology during fungal infection. Oikonomou et al. find that the kinase DAPK1 induced by IFN-γ promotes both noncanonical autophagy and NLRP3 inflammasome proteasomal degradation in response to Aspergillus fumigatus. By restoring DAPK1, IFN-γ may assist fungal clearance while restraining inflammation in mice and humans.

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          Most cited references40

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          The presence of malfolded proteins in the endoplasmic reticulum signals the induction of glucose-regulated proteins.

          Two glucose-regulated proteins, GRP78 and GRP94, are major constituents of the endoplasmic reticulum (ER) of mammalian cells. These proteins are synthesized constitutively in detectable amounts under normal growth conditions; they can also be induced under a variety of conditions of stress including glucose starvation and treatment with drugs that inhibit cellular glycosylation, with calcium ionophores or with amino-acid analogues. Unlike the closely-related heat shock protein (HSP) family, the GRPs are not induced significantly by high temperature. Recently, GRP78 has been identified as the immunoglobulin heavy chain binding protein (BiP) (ref. 5 and Y.K. et al., in preparation) which binds transiently to a variety of nascent, wild-type secretory and transmembrane proteins and permanently to malfolded proteins that accumulate within the ER. We have tested the hypothesis that the presence of malfolded proteins may be the primary signal for induction of GRPs by expressing wild-type and mutant forms of influenza virus haemagglutinin (HA) in simian cells. Only malfolded HAs, whose transport from the ER is blocked, induced the synthesis of GRPs 78 and 94. Additional evidence is presented that malfolding per se, rather than abnormal glycosylation, is the proximal inducer of this family of stress proteins.
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            Human IRGM induces autophagy to eliminate intracellular mycobacteria.

            Immunity-related p47 guanosine triphosphatases (IRG) play a role in defense against intracellular pathogens. We found that the murine Irgm1 (LRG-47) guanosine triphosphatase induced autophagy and generated large autolysosomal organelles as a mechanism for the elimination of intracellular Mycobacterium tuberculosis. We also identified a function for a human IRG protein in the control of intracellular pathogens and report that the human Irgm1 ortholog, IRGM, plays a role in autophagy and in the reduction of intracellular bacillary load.
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              Canonical and non-canonical autophagy: variations on a common theme of self-eating?

              The autophagosome is the central organelle in macroautophagy, a vacuolar lysosomal catabolic pathway that degrades cytoplasmic material to fuel starving cells and eliminates intracellular pathogens. Macroautophagy has important physiological roles during development, ageing and the immune response, and its cytoprotective function is compromised in various diseases. A set of autophagy-related (ATG) proteins is hierarchically recruited to the phagophore, the initial membrane template in the construction of the autophagosome. However, recent findings suggest that macroautophagy can also occur in the absence of some of these key autophagy proteins, through the unconventional biogenesis of canonical autophagosomes. Such alternatives to the evolutionarily conserved scheme might provide additional therapeutic opportunities.
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                Author and article information

                Contributors
                Journal
                Cell Host Microbe
                Cell Host Microbe
                Cell Host & Microbe
                Cell Press
                1931-3128
                1934-6069
                14 December 2016
                14 December 2016
                : 20
                : 6
                : 744-757
                Affiliations
                [1 ]Department of Experimental Medicine, University of Perugia, 06132 Perugia, Italy
                [2 ]Department of Agriculture, Food, and Environmental Sciences, University of Perugia, 06132 Perugia, Italy
                [3 ]Division of Hematology and Clinical Immunology, Department of Medicine, University of Perugia, 06132 Perugia, Italy
                [4 ]Department of Clinical and Experimental Medicine, University of Parma, 43126 Parma, Italy
                [5 ]Department of Pediatrics, Unit of Immune and Infectious Diseases, Children’s Hospital Bambino Gesù, 00146 Rome, Italy
                Author notes
                []Corresponding author luigina.romani@ 123456unipg.it
                [6]

                Lead Contact

                Article
                S1931-3128(16)30438-3
                10.1016/j.chom.2016.10.012
                5161749
                27889463
                7fe08216-1661-4bad-93d8-5b304129bb3c
                © 2016 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 1 July 2016
                : 21 September 2016
                : 21 October 2016
                Categories
                Article

                Microbiology & Virology
                Microbiology & Virology

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