0
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Detection of minimal residual disease in acute myeloid leukemia: evaluating utility and challenges

      brief-report

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          This study discusses the importance of minimal residual disease (MRD) detection in acute myeloid leukemia (AML) patients using liquid biopsy and next-generation sequencing (NGS). AML prognosis is based on various factors, including genetic alterations. NGS has revealed the molecular complexity of AML and helped refine risk stratification and personalized therapies. The long-term survival rates for AML patients are low, and MRD assessment is crucial in predicting prognosis. Currently, the most common methods for MRD detection are flow cytometry and quantitative PCR, but NGS is being incorporated into clinical practice due to its ability to detect genomic aberrations in the majority of AML patients. Typically, bone marrow samples are used for MRD assessment, but using peripheral blood samples or liquid biopsies would be less invasive. Leukemia originates in the bone marrow, along with the cfDNA obtained from peripheral blood. This study aimed to assess the utility of cell-free DNA (cfDNA) from peripheral blood samples for MRD detection in AML patients. A cohort of 20 AML patients was analyzed using NGS, and a correlation between MRD assessment by cfDNA and circulating tumor cells (CTCs) in paired samples was observed. Furthermore, a higher tumor signal was detected in cfDNA compared to CTCs, indicating greater sensitivity. Challenges for the application of liquid biopsy in MRD assessment were discussed, including the selection of appropriate markers and the sensitivity of certain markers. This study emphasizes the potential of liquid biopsy using cfDNA for MRD detection in AML patients and highlights the need for further research in this area.

          Related collections

          Most cited references53

          • Record: found
          • Abstract: found
          • Article: not found

          Genomic Classification and Prognosis in Acute Myeloid Leukemia

          New England Journal of Medicine, 374(23), 2209-2221
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.

            Many mutations that contribute to the pathogenesis of acute myeloid leukemia (AML) are undefined. The relationships between patterns of mutations and epigenetic phenotypes are not yet clear. We analyzed the genomes of 200 clinically annotated adult cases of de novo AML, using either whole-genome sequencing (50 cases) or whole-exome sequencing (150 cases), along with RNA and microRNA sequencing and DNA-methylation analysis. AML genomes have fewer mutations than most other adult cancers, with an average of only 13 mutations found in genes. Of these, an average of 5 are in genes that are recurrently mutated in AML. A total of 23 genes were significantly mutated, and another 237 were mutated in two or more samples. Nearly all samples had at least 1 nonsynonymous mutation in one of nine categories of genes that are almost certainly relevant for pathogenesis, including transcription-factor fusions (18% of cases), the gene encoding nucleophosmin (NPM1) (27%), tumor-suppressor genes (16%), DNA-methylation-related genes (44%), signaling genes (59%), chromatin-modifying genes (30%), myeloid transcription-factor genes (22%), cohesin-complex genes (13%), and spliceosome-complex genes (14%). Patterns of cooperation and mutual exclusivity suggested strong biologic relationships among several of the genes and categories. We identified at least one potential driver mutation in nearly all AML samples and found that a complex interplay of genetic events contributes to AML pathogenesis in individual patients. The databases from this study are widely available to serve as a foundation for further investigations of AML pathogenesis, classification, and risk stratification. (Funded by the National Institutes of Health.).
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Detection of circulating tumor DNA in early- and late-stage human malignancies.

              The development of noninvasive methods to detect and monitor tumors continues to be a major challenge in oncology. We used digital polymerase chain reaction-based technologies to evaluate the ability of circulating tumor DNA (ctDNA) to detect tumors in 640 patients with various cancer types. We found that ctDNA was detectable in >75% of patients with advanced pancreatic, ovarian, colorectal, bladder, gastroesophageal, breast, melanoma, hepatocellular, and head and neck cancers, but in less than 50% of primary brain, renal, prostate, or thyroid cancers. In patients with localized tumors, ctDNA was detected in 73, 57, 48, and 50% of patients with colorectal cancer, gastroesophageal cancer, pancreatic cancer, and breast adenocarcinoma, respectively. ctDNA was often present in patients without detectable circulating tumor cells, suggesting that these two biomarkers are distinct entities. In a separate panel of 206 patients with metastatic colorectal cancers, we showed that the sensitivity of ctDNA for detection of clinically relevant KRAS gene mutations was 87.2% and its specificity was 99.2%. Finally, we assessed whether ctDNA could provide clues into the mechanisms underlying resistance to epidermal growth factor receptor blockade in 24 patients who objectively responded to therapy but subsequently relapsed. Twenty-three (96%) of these patients developed one or more mutations in genes involved in the mitogen-activated protein kinase pathway. Together, these data suggest that ctDNA is a broadly applicable, sensitive, and specific biomarker that can be used for a variety of clinical and research purposes in patients with multiple different types of cancer.
                Bookmark

                Author and article information

                Contributors
                Journal
                Front Immunol
                Front Immunol
                Front. Immunol.
                Frontiers in Immunology
                Frontiers Media S.A.
                1664-3224
                13 June 2024
                2024
                : 15
                : 1252258
                Affiliations
                [1] 1 Hematology Department, Hospital Universitario 12 de Octubre, Instituto de Investigación Sanitaria Imas12 , Madrid, Spain
                [2] 2 Hematological Malignancies Clinical Research Unit, Centro Nacional de Investigaciones Oncológicas (CNIO) , Madrid, Spain
                [3] 3 Altum Sequencing Co. , Madrid, Spain
                [4] 4 Computational Science Department, Carlos III University , Madrid, Spain
                [5] 5 Department of Medicine, Complutense University of Madrid , Madrid, Spain
                [6] 6 Centro de Investigación Biomédica en Red de Cáncer (CIBERONC), Instituto Carlos III , Madrid, Spain
                Author notes

                Edited by: Susana García-Silva, Spanish National Cancer Research Center, Spain

                Reviewed by: Zesong Yang, First Affiliated Hospital of Chongqing Medical University, China

                Giovannino Silvestri, University of Maryland Medical Center, United States

                Chunjie Yu, University of Florida, United States

                Simona Bernardi, University of Brescia, Italy

                *Correspondence: Rosa Ayala, rayala@ 123456ucm.es

                †These authors share senior authorship

                ‡ORCID: Alejandro Martin, orcid.org/0000-0002-5180-5760

                Article
                10.3389/fimmu.2024.1252258
                11210172
                38938565
                7ec6e6f9-67e7-40ae-b192-954857455eb0
                Copyright © 2024 Álvarez, Martín, Dorado, Colmenares, Rufián, Rodríguez, Giménez, Carneros, Sanchez, Carreño, Rapado, Heredia, Martínez-López, Barrio and Ayala

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 03 July 2023
                : 29 April 2024
                Page count
                Figures: 3, Tables: 1, Equations: 0, References: 53, Pages: 10, Words: 4665
                Funding
                The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This work was funded by the Instituto de Salud Carlos III (PI19/01518 and PI22/1088) and the CRIS Foundation, and was co-funded by the European Regional Development Fund (ERDF).
                Categories
                Immunology
                Brief Research Report
                Custom metadata
                Cancer Immunity and Immunotherapy

                Immunology
                aml,liquid biopsy,mrd,ngs,multiparametric flow cytometry,leukaemia
                Immunology
                aml, liquid biopsy, mrd, ngs, multiparametric flow cytometry, leukaemia

                Comments

                Comment on this article