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      Role of Genetics, Genomics, and Breeding Approaches to Combat Stripe Rust of Wheat

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          Abstract

          Puccinia striiformis (Pst) is a devastating biotrophic fungal pathogen that causes wheat stripe rust. It usually loves cool and moist places and can cause 100% crop yield losses in a single field when ideal conditions for disease incidence prevails. Billions of dollars are lost due to fungicide application to reduce stripe rust damage worldwide. Pst is a macrocyclic, heteroecious fungus that requires primary (wheat or grasses) as well as secondary host ( Berberis or Mahonia spp.) for completion of life cycle. In this review, we have summarized the knowledge about pathogen life cycle, genes responsible for stripe rust resistance, and susceptibility in wheat. In the end, we discussed the importance of conventional and modern breeding tools for the development of Pst-resistant wheat varieties. According to our findings, genetic engineering and genome editing are less explored tools for the development of Pst-resistant wheat varieties; hence, we highlighted the putative use of advanced genome-modifying tools, i.e., base editing and prime editing, for the development of Pst-resistant wheat.

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          Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors

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            Speed breeding is a powerful tool to accelerate crop research and breeding

            The growing human population and a changing environment have raised significant concern for global food security, with the current improvement rate of several important crops inadequate to meet future demand 1 . This slow improvement rate is attributed partly to the long generation times of crop plants. Here, we present a method called 'speed breeding', which greatly shortens generation time and accelerates breeding and research programmes. Speed breeding can be used to achieve up to 6 generations per year for spring wheat (Triticum aestivum), durum wheat (T. durum), barley (Hordeum vulgare), chickpea (Cicer arietinum) and pea (Pisum sativum), and 4 generations for canola (Brassica napus), instead of 2-3 under normal glasshouse conditions. We demonstrate that speed breeding in fully enclosed, controlled-environment growth chambers can accelerate plant development for research purposes, including phenotyping of adult plant traits, mutant studies and transformation. The use of supplemental lighting in a glasshouse environment allows rapid generation cycling through single seed descent (SSD) and potential for adaptation to larger-scale crop improvement programs. Cost saving through light-emitting diode (LED) supplemental lighting is also outlined. We envisage great potential for integrating speed breeding with other modern crop breeding technologies, including high-throughput genotyping, genome editing and genomic selection, accelerating the rate of crop improvement.
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              Breeding crops to feed 10 billion

              Crop improvements can help us to meet the challenge of feeding a population of 10 billion, but can we breed better varieties fast enough? Technologies such as genotyping, marker-assisted selection, high-throughput phenotyping, genome editing, genomic selection and de novo domestication could be galvanized by using speed breeding to enable plant breeders to keep pace with a changing environment and ever-increasing human population.
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                Author and article information

                Contributors
                Journal
                Front Nutr
                Front Nutr
                Front. Nutr.
                Frontiers in Nutrition
                Frontiers Media S.A.
                2296-861X
                06 October 2020
                2020
                : 7
                : 580715
                Affiliations
                [1] 1Agricultural Biotechnology Research Institute, Ayub Agricultural Research Institute , Faisalabad, Pakistan
                [2] 2State Key Laboratory of Rice Biology, China National Rice Research Institute , Hangzhou, China
                [3] 3Department of Plant Breeding and Genetics, University of Agriculture , Faisalabad, Pakistan
                [4] 4College of Life Sciences, Yan'an University , Yan'an, China
                Author notes

                Edited by: Rakesh Bhardwaj, National Bureau of Plant Genetic Resources (ICAR), India

                Reviewed by: Palmiro Poltronieri, National Research Council (CNR), Italy; Amit Singh, National Bureau of Plant Genetic Resources (ICAR), India

                *Correspondence: Shakra Jamil shakrajamil29@ 123456gmail.com

                This article was submitted to Nutrition and Sustainable Diets, a section of the journal Frontiers in Nutrition

                Article
                10.3389/fnut.2020.580715
                7573350
                33123549
                7d840815-65de-41e2-b4ab-560173887297
                Copyright © 2020 Jamil, Shahzad, Ahmad, Fatima, Zahid, Anwar, Iqbal and Wang.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 06 July 2020
                : 19 August 2020
                Page count
                Figures: 3, Tables: 2, Equations: 0, References: 84, Pages: 12, Words: 8589
                Funding
                Funded by: National Key Research and Development Program of China Stem Cell and Translational Research 10.13039/501100013290
                Award ID: 2017YFC0504704
                Funded by: National Natural Science Foundation of China-Guangdong Joint Fund 10.13039/501100014857
                Award ID: 41761068
                Award ID: 51669034
                Award ID: 51809224
                Categories
                Nutrition
                Review

                fungal pathogen,puccina striiformis,yellow rust,wheat,resistance genes,new breeding strategies

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