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      Efficient CRISPR/Cas9-mediated white gene editing in the global tortricid fruit pest Grapholita molesta

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          Abstract

          Internal fruit borers (Lepidoptera: Tortricidae) are serious fruit pests. Of particular significance is Grapholita molesta given its pest status of stone and pome fruits. So far, successful control of tortricid moths largely relies on repeated insecticide applications. The development of novel technology by genome manipulation through CRISPR/Cas9 is an environmentally friendly pest management alternative. Due to the small size of eggs, CRISPR/Cas9 protocols have not been developed for tortricid moths like G. molesta. The white gene is widely used as genetic marker in Drosophila. Here, the white gene ( Gmwhite) from G. molesta was identified and it was found that Gmwhite was expressed at all developmental stages. The Gmwhite knockout strain (White-KO) was established using CRISPR/Cas9 genome editing system. When compared with wild type, the eye color of the adult moth in the White-KO strain changed to white and the body color of the fifth-instar larvae of the White-KO strain changed from pink/red to white. The females’ fecundity of the White-KO strain was not affected whereas the flight capacity was significantly decreased. The acquired white compound eye of the White-KO strain is autosomally recessive inherited. The feasibility of the CRISPR/Cas9 methodology was validated by dual-target editing of Gmwhite. Our findings provide the first evidence that the white gene can be used as a visual reference gene for genetic manipulation of tortricid moths. The present study developed CRISPR/Cas9-mediated gene editing technology which can be used for developing genome editing control strategy as well as for gene function analyses in G. molesta.

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          Most cited references27

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          Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

          The two most commonly used methods to analyze data from real-time, quantitative PCR experiments are absolute quantification and relative quantification. Absolute quantification determines the input copy number, usually by relating the PCR signal to a standard curve. Relative quantification relates the PCR signal of the target transcript in a treatment group to that of another sample such as an untreated control. The 2(-Delta Delta C(T)) method is a convenient way to analyze the relative changes in gene expression from real-time quantitative PCR experiments. The purpose of this report is to present the derivation, assumptions, and applications of the 2(-Delta Delta C(T)) method. In addition, we present the derivation and applications of two variations of the 2(-Delta Delta C(T)) method that may be useful in the analysis of real-time, quantitative PCR data. Copyright 2001 Elsevier Science (USA).
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            RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design.

            Gene silencing through RNA interference (RNAi) has revolutionized the study of gene function, particularly in non-model insects. However, in Lepidoptera (moths and butterflies) RNAi has many times proven to be difficult to achieve. Most of the negative results have been anecdotal and the positive experiments have not been collected in such a way that they are possible to analyze. In this review, we have collected detailed data from more than 150 experiments including all to date published and many unpublished experiments. Despite a large variation in the data, trends that are found are that RNAi is particularly successful in the family Saturniidae and in genes involved in immunity. On the contrary, gene expression in epidermal tissues seems to be most difficult to silence. In addition, gene silencing by feeding dsRNA requires high concentrations for success. Possible causes for the variability of success in RNAi experiments in Lepidoptera are discussed. The review also points to a need to further investigate the mechanism of RNAi in lepidopteran insects and its possible connection to the innate immune response. Our general understanding of RNAi in Lepidoptera will be further aided in the future as our public database at http://insectacentral.org/RNAi will continue to gather information on RNAi experiments. Copyright © 2010 Elsevier Ltd. All rights reserved.
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              CasOT: a genome-wide Cas9/gRNA off-target searching tool.

              The CRISPR/Cas or Cas9/guide RNA system is a newly developed, easily engineered and highly effective tool for gene targeting; it has considerable off-target effects in cultured human cells and in several organisms. However, the Cas9/guide RNA target site is too short for existing alignment tools to exhaustively and effectively identify potential off-target sites. CasOT is a local tool designed to find potential off-target sites in any given genome or user-provided sequence, with user-specified types of protospacer adjacent motif, and number of mismatches allowed in the seed and non-seed regions. http://eendb.zfgenetics.org/casot/ CONTACT: zfgenetics@gmail.com or bzhang@pku.edu.cn SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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                Author and article information

                Journal
                entomologia
                Entomologia Generalis
                Journal of General and Applied Entomology - Zeitschrift für Allgemeine und Angewandte Entomologie
                entomologia
                Schweizerbart Science Publishers (Stuttgart, Germany http://www.schweizerbart.com/ mail@ 123456schweizerbart.de )
                0171-8177
                21 November 2022
                08 December 2022
                : 42
                : 6
                : 987-996
                Affiliations
                1 State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Crop Pest Integrated Pest Management on the Loess Plateau of Ministry of Agriculture and Rural Affairs, Northwest A&F University, Yangling 712100, Shaanxi, China
                2 Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA 01003 USA
                Author notes

                * Corresponding author: maohua.chen@ 123456nwsuaf.edu.cn

                ** Sha Su and Yayun Zuo have contributed equally to this work.

                Article
                102299 1563
                10.1127/entomologia/2022/1563
                7cf04c2b-9dcd-4232-b108-a45061b3e9ba
                Copyright © 2022 E. Schweizerbart’sche Verlagsbuchhandlung, 70176 Stuttgart, Germany
                History
                : 25 January 2022
                : 11 April 2022
                : 17 July 2022
                : 18 September 2022
                Page count
                Figures: 5, Pages: 10
                Custom metadata
                1
                research_paper

                Entomology,Parasitology,Ecology,Molecular biology,Pests, Diseases & Weeds
                genome editing,body color,CRISPR/Cas9, White gene

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