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      Homeobox NKX2-3 promotes marginal-zone lymphomagenesis by activating B-cell receptor signalling and shaping lymphocyte dynamics

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      1 , 1 , 2 , 2 , 3 , 4 , 5 , 6 , 1 , 7 , 8 , 8 , 9 , 1 , 1 , 1 , 1 , 4 , 4 , 10 , 11 , 12 , 12 , 13 , 13 , 14 , 15 , 16 , 17 , 18 , 19 , 20 , 21 , 21 , 22 , 22 , 23 , 11 , 24 , 1 , 7 , 6 , 2 , 5 , a , 1
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          Abstract

          NKX2 homeobox family proteins have a role in cancer development. Here we show that NKX2- 3 is overexpressed in tumour cells from a subset of patients with marginal-zone lymphomas, but not with other B-cell malignancies. While Nkx2-3-deficient mice exhibit the absence of marginal-zone B cells, transgenic mice with expression of NKX2-3 in B cells show marginal-zone expansion that leads to the development of tumours, faithfully recapitulating the principal clinical and biological features of human marginal-zone lymphomas. NKX2-3 induces B-cell receptor signalling by phosphorylating Lyn/Syk kinases, which in turn activate multiple integrins (LFA-1, VLA-4), adhesion molecules (ICAM-1, MadCAM-1) and the chemokine receptor CXCR4. These molecules enhance migration, polarization and homing of B cells to splenic and extranodal tissues, eventually driving malignant transformation through triggering NF-κB and PI3K-AKT pathways. This study implicates oncogenic NKX2-3 in lymphomagenesis, and provides a valid experimental mouse model for studying the biology and therapy of human marginal-zone B-cell lymphomas.

          Abstract

          The homeobox NKX2 family of transcriptional factors has been shown to regulate fundamental developmental processes. Here, the authors show that NKX2-3 is a bona fide oncogenic driver in marginal-zone B-cell lymphoma and that it promotes lymphomagenesis by shaping lymphocyte dynamics and promoting BCR signalling.

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          Most cited references48

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          Homeobox genes and axial patterning.

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            Characterizing the cancer genome in lung adenocarcinoma.

            Somatic alterations in cellular DNA underlie almost all human cancers. The prospect of targeted therapies and the development of high-resolution, genome-wide approaches are now spurring systematic efforts to characterize cancer genomes. Here we report a large-scale project to characterize copy-number alterations in primary lung adenocarcinomas. By analysis of a large collection of tumours (n = 371) using dense single nucleotide polymorphism arrays, we identify a total of 57 significantly recurrent events. We find that 26 of 39 autosomal chromosome arms show consistent large-scale copy-number gain or loss, of which only a handful have been linked to a specific gene. We also identify 31 recurrent focal events, including 24 amplifications and 7 homozygous deletions. Only six of these focal events are currently associated with known mutations in lung carcinomas. The most common event, amplification of chromosome 14q13.3, is found in approximately 12% of samples. On the basis of genomic and functional analyses, we identify NKX2-1 (NK2 homeobox 1, also called TITF1), which lies in the minimal 14q13.3 amplification interval and encodes a lineage-specific transcription factor, as a novel candidate proto-oncogene involved in a significant fraction of lung adenocarcinomas. More generally, our results indicate that many of the genes that are involved in lung adenocarcinoma remain to be discovered.
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              Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.

              A genome-wide association scan in individuals with Crohn's disease by the Wellcome Trust Case Control Consortium detected strong association at four novel loci. We tested 37 SNPs from these and other loci for association in an independent case-control sample. We obtained replication for the autophagy-inducing IRGM gene on chromosome 5q33.1 (replication P = 6.6 x 10(-4), combined P = 2.1 x 10(-10)) and for nine other loci, including NKX2-3, PTPN2 and gene deserts on chromosomes 1q and 5p13.
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                Author and article information

                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group
                2041-1723
                14 June 2016
                2016
                : 7
                : 11889
                Affiliations
                [1 ]Division of Hemato-Oncology, Center for Applied Medical Research CIMA, University of Navarra , IDISNA, Pamplona 31008, Spain
                [2 ]Department of Immunology and Oncology, Centro Nacional de Biotecnología (CNB)-CSIC , Madrid 28049, Spain
                [3 ]Department of Immunology and Biotechnology, Szentágothai Research Center, University of Pécs , Pécs H-7624, Hungary
                [4 ]Division of Molecular Histopathology, Department of Pathology, Cambridge University , Cambridge CB2 1QP, UK
                [5 ]MRC Toxicology Unit and Ernest and Helen Scott Haematological Research Institute, Department of Cancer Studies and Molecular Medicine, University of Leicester , Leicester LE2 7LX, UK
                [6 ]Department of Haematology, Royal Bournemouth Hospital , Bournemouth BH7 7DW, UK
                [7 ]Department of Hematology, Clinica Universidad de Navarra , IDISNA, Pamplona 31008, Spain
                [8 ]Institute of Human Genetics, Christian-Albrechts-University Kiel & University Hospital Schleswig-Holstein, Campus Kiel , Kiel 24105, Germany
                [9 ]Bio-informatic Unit, Department of Genomics and Proteomics, Center for Applied Medical Research CIMA, University of Navarra , IDISNA, Pamplona 31008, Spain
                [10 ]Department of Genetics, School of Medicine, University of Navarra , IDISNA, Pamplona 31008, Spain
                [11 ]Centre for Translation Cell and Tissue Research, KU Leuven , Leuven 3000, Belgium
                [12 ]Department of Pathology, Institut Universitaire du Cancer de Toulouse-Oncopole , Labex TOUCAN and CRCT INSERM U1037, Toulouse F-31053, France
                [13 ]Centro de Biologia Molecular Severo Ochoa, CSIC/Universidad Autonoma , Madrid 28049, Spain
                [14 ]Experimental Therapeutics and Translational Oncology Program, Institute of Molecular and Cellular Biology of Cancer, CSIC/University of Salamanca; and Institute of Biomedical Research of Salamanca (IBSAL) , Salamanca 37007, Spain
                [15 ]Molecular Genetics Unit, University Hospital Marques de Valdecilla and IFIMAV , Santander 39011, Spain
                [16 ]Hematology Department, Hospital San Pedro , Logroño, 26006, La Rioja, Spain
                [17 ]Department of Hematology, Complejo Hospitalario de Navarra, Servicio Navarro de Salud , IDISNA, Pamplona 31008, Spain
                [18 ]Department of Pathology, Cancer Research Program, Institut Municipal d'Investigacions Mèdiques (IMIM), Hospital del Mar , Barcelona 08003, Spain
                [19 ]Department of Clinical Hematology, Cancer Research Program, Institut Municipal d'Investigacions Mèdiques (IMIM), Hospital del Mar , Barcelona 08003, Spain
                [20 ]Department of Hematology, ICO-Hospital Universitari Germans Trias i Pujol, Josep Carreras Leukaemia Research Institute, Universitat Autònoma de Barcelona , Badalona 08916, Spain
                [21 ]Department of Hematology, IBSAL-University Hospital and IBMCC-CSIC, University of Salamanca , Salamanca 37007, Spain
                [22 ]Department of Hematology, Hospital Clinico, INCLIVA Biomedical Research Institute, University of Valencia , Valencia 46010, Spain
                [23 ]Department of Pathology, Hospital Clinico, University of Valencia , Valencia 46010, Spain
                [24 ]Department of Medicine/Hematology-Oncology, Weill Cornell Medical College , New York, New York 10065, USA
                Author notes
                [*]

                These authors contributed equally to this work.

                [†]

                Present address: Dynamics of Host-Pathogen Interactions, Institut Pasteur, 25 rue du Dr Roux, 75015 Paris, France.

                Article
                ncomms11889
                10.1038/ncomms11889
                4911677
                27297662
                78f9d93b-cadd-460b-bf34-ae66c7de3dd5
                Copyright © 2016, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.

                This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

                History
                : 30 September 2015
                : 10 May 2016
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