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      Computational approaches for evaluating morphological changes in the corneal stroma associated with decellularization

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          Abstract

          Decellularized corneas offer a promising and sustainable source of replacement grafts, mimicking native tissue and reducing the risk of immune rejection post-transplantation. Despite great success in achieving acellular scaffolds, little consensus exists regarding the quality of the decellularized extracellular matrix. Metrics used to evaluate extracellular matrix performance are study-specific, subjective, and semi-quantitative. Thus, this work focused on developing a computational method to examine the effectiveness of corneal decellularization. We combined conventional semi-quantitative histological assessments and automated scaffold evaluations based on textual image analyses to assess decellularization efficiency. Our study highlights that it is possible to develop contemporary machine learning (ML) models based on random forests and support vector machine algorithms, which can identify regions of interest in acellularized corneal stromal tissue with relatively high accuracy. These results provide a platform for developing machine learning biosensing systems for evaluating subtle morphological changes in decellularized scaffolds, which are crucial for assessing their functionality.

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          Most cited references71

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          An overview of tissue and whole organ decellularization processes.

          Biologic scaffold materials composed of extracellular matrix (ECM) are typically derived by processes that involve decellularization of tissues or organs. Preservation of the complex composition and three-dimensional ultrastructure of the ECM is highly desirable but it is recognized that all methods of decellularization result in disruption of the architecture and potential loss of surface structure and composition. Physical methods and chemical and biologic agents are used in combination to lyse cells, followed by rinsing to remove cell remnants. Effective decellularization methodology is dictated by factors such as tissue density and organization, geometric and biologic properties desired for the end product, and the targeted clinical application. Tissue decellularization with preservation of ECM integrity and bioactivity can be optimized by making educated decisions regarding the agents and techniques utilized during processing. An overview of decellularization methods, their effect upon resulting ECM structure and composition, and recently described perfusion techniques for whole organ decellularization techniques are presented herein. Copyright © 2011 Elsevier Ltd. All rights reserved.
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            MaZda--a software package for image texture analysis.

            MaZda, a software package for 2D and 3D image texture analysis is presented. It provides a complete path for quantitative analysis of image textures, including computation of texture features, procedures for feature selection and extraction, algorithms for data classification, various data visualization and image segmentation tools. Initially, MaZda was aimed at analysis of magnetic resonance image textures. However, it revealed its effectiveness in analysis of other types of textured images, including X-ray and camera images. The software was utilized by numerous researchers in diverse applications. It was proven to be an efficient and reliable tool for quantitative image analysis, even in more accurate and objective medical diagnosis. MaZda was also successfully used in food industry to assess food product quality. MaZda can be downloaded for public use from the Institute of Electronics, Technical University of Lodz webpage.
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              Anatomy of cornea and ocular surface

              Important functions of cornea in the eye include protecting the structures inside the eye, contributing to the refractive power of the eye, and focusing light rays on the retina with minimum scatter and optical degradation. Considerable advances have taken place in understanding the organization of collagen in the corneal stroma and its clinical significance. In this review, the structure and function of various components of cornea and ocular surface are presented.
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                Author and article information

                Contributors
                Journal
                Front Bioeng Biotechnol
                Front Bioeng Biotechnol
                Front. Bioeng. Biotechnol.
                Frontiers in Bioengineering and Biotechnology
                Frontiers Media S.A.
                2296-4185
                26 May 2023
                2023
                : 11
                : 1105377
                Affiliations
                [1] 1 Department of Medical Physiology , Faculty of Medicine , Visegradska 26/II , University of Belgrade , Belgrade, Serbia
                [2] 2 University of Haifa , Haifa, Israel
                [3] 3 Department of Physiology and Cell Biology , Faculty of Health Sciences , Ben-Gurion University of the Negev , Be’er Sheva, Israel
                [4] 4 Department of Pharmacology , College of Medicine and Health Sciences , Khalifa University of Science and Technology , Abu Dhabi, United Arab Emirates
                [5] 5 Faculty of Medicine , University of Belgrade , University Clinical Center of Serbia , Belgrade, Serbia
                [6] 6 Faculty of Medicine , Clinical Hospital Center Zemun , University of Belgrade , Belgrade, Serbia
                [7] 7 Department of Immunology and Physiology , College of Medicine and Health Sciences , Khalifa University of Science and Technology , Abu Dhabi, United Arab Emirates
                [8] 8 Biomedical Engineering , Healthcare Engineering Innovation Center , Khalifa University of Science and Technology , Abu Dhabi, United Arab Emirates
                [9] 9 Center for Biotechnology , Khalifa University of Science and Technology , Abu Dhabi, United Arab Emirates
                [10] 10 Anatomical Pathology Laboratory , Cleveland Clinic Abu Dhabi , Abu Dhabi, United Arab Emirates
                [11] 11 Department of Mechanical Engineering , College of Medicine and Health Sciences , Khalifa University of Science and Technology , Abu Dhabi, United Arab Emirates
                Author notes

                Edited by: Barbara Blanco-Fernandez, Institute for Bioengineering of Catalonia (IBEC), Spain

                Reviewed by: Jangwook P. Jung, Louisiana State University, United States

                Sumit Murab, Indian Institute of Technology Mandi, India

                Fengyuan Zhao, Peking University Third Hospital, China

                *Correspondence: Peter R. Corridon, peter.corridon@ 123456ku.ac.ae
                [ † ]

                Deceased

                Article
                1105377
                10.3389/fbioe.2023.1105377
                10250676
                37304146
                78af4d12-ba38-4f22-a211-ba0cd2fac6b0
                Copyright © 2023 Pantic, Cumic, Valjarevic, Shakeel, Wang, Vurivi, Daoud, Chan, Petroianu, Shibru, Ali, Nesic, Salih, Butt and Corridon.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 22 November 2022
                : 11 April 2023
                Categories
                Bioengineering and Biotechnology
                Original Research
                Custom metadata
                Biomaterials

                cornea,corneal stroma,decellualrization,glcm (gray level co-event matrix),keratocytes

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