Structural Insight into BLM Recognition by TopBP1

SUMMARY

Topoisomerase IIβ binding protein 1 (TopBP1) is a critical protein-protein interaction hub in DNA replication checkpoint control. It was proposed that TopBP1 BRCT5 interacts with Bloom syndrome helicase (BLM) to regulate genome stability through either phospho-Ser304 or phospho-Ser338 of BLM. Here we show that TopBP1 BRCT5 specifically interacts with the BLM region surrounding pSer304, not pSer338. Our crystal structure of TopBP1 BRCT4/5 bound to BLM reveals recognition of pSer304 by a conserved pSer-binding pocket, and interactions between a FVPP motif N-terminal to pSer304 and a hydrophobic groove on BRCT5. This interaction utilizes the same surface of BRCT5 that recognizes the DNA damage mediator, MDC1, however the binding orientations of MDC1 and BLM are reversed. While the MDC1 interactions are largely electrostatic, the interaction with BLM has higher affinity and relies on a mix of electrostatics and hydrophobicity. We suggest similar evolutionarily conserved interactions may govern interactions between TopBP1 and 53BP1.

eTOC BLURB

TopBP1 is a hub for DNA damage signaling interactions. Sun et al. determine the structure of TopBP1 BRCT5 bound to its phosphorylated partner, Bloom syndrome helicase (BLM). The structure reveals a strikingly different binding mode than that observed for another TopBP1 BRCT5 interaction partner, MDC1.