133
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: not found

      The substrate degradome of meprin metalloproteases reveals an unexpected proteolytic link between meprin β and ADAM10

      research-article

      Read this article at

      ScienceOpenPublisherPMC
      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          The in vivo roles of meprin metalloproteases in pathophysiological conditions remain elusive. Substrates define protease roles. Therefore, to identify natural substrates for human meprin α and β we employed TAILS (terminal amine isotopic labeling of substrates), a proteomics approach that enriches for N-terminal peptides of proteins and cleavage fragments. Of the 151 new extracellular substrates we identified, it was notable that ADAM10 (a disintegrin and metalloprotease domain-containing protein 10)—the constitutive α-secretase—is activated by meprin β through cleavage of the propeptide. To validate this cleavage event, we expressed recombinant proADAM10 and after preincubation with meprin β, this resulted in significantly elevated ADAM10 activity. Cellular expression in murine primary fibroblasts confirmed activation. Other novel substrates including extracellular matrix proteins, growth factors and inhibitors were validated by western analyses and enzyme activity assays with Edman sequencing confirming the exact cleavage sites identified by TAILS. Cleavages in vivo were confirmed by comparing wild-type and meprin −/− mice. Our finding of cystatin C, elafin and fetuin-A as substrates and natural inhibitors for meprins reveal new mechanisms in the regulation of protease activity important for understanding pathophysiological processes.

          Electronic supplementary material

          The online version of this article (doi:10.1007/s00018-012-1106-2) contains supplementary material, which is available to authorized users.

          Related collections

          Most cited references76

          • Record: found
          • Abstract: found
          • Article: not found

          Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.

          We present a statistical model to estimate the accuracy of peptide assignments to tandem mass (MS/MS) spectra made by database search applications such as SEQUEST. Employing the expectation maximization algorithm, the analysis learns to distinguish correct from incorrect database search results, computing probabilities that peptide assignments to spectra are correct based upon database search scores and the number of tryptic termini of peptides. Using SEQUEST search results for spectra generated from a sample of known protein components, we demonstrate that the computed probabilities are accurate and have high power to discriminate between correctly and incorrectly assigned peptides. This analysis makes it possible to filter large volumes of MS/MS database search results with predictable false identification error rates and can serve as a common standard by which the results of different research groups are compared.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: found
            Is Open Access

            MEROPS: the peptidase database

            Peptidases, their substrates and inhibitors are of great relevance to biology, medicine and biotechnology. The MEROPS database (http://merops.sanger.ac.uk) aims to fulfil the need for an integrated source of information about these. The database has a hierarchical classification in which homologous sets of peptidases and protein inhibitors are grouped into protein species, which are grouped into families, which are in turn grouped into clans. The classification framework is used for attaching information at each level. An important focus of the database has become distinguishing one peptidase from another through identifying the specificity of the peptidase in terms of where it will cleave substrates and with which inhibitors it will interact. We have collected over 39 000 known cleavage sites in proteins, peptides and synthetic substrates. These allow us to display peptidase specificity and alignments of protein substrates to give an indication of how well a cleavage site is conserved, and thus its probable physiological relevance. While the number of new peptidase families and clans has only grown slowly the number of complete genomes has greatly increased. This has allowed us to add an analysis tool to the relevant species pages to show significant gains and losses of peptidase genes relative to related species.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Tumour microenvironment - opinion: validating matrix metalloproteinases as drug targets and anti-targets for cancer therapy.

              The matrix metalloproteinases (MMPs) mediate homeostasis of the extracellular environment. They have multiple signalling activities that are commonly altered during tumorigenesis and that might serve as intervention points for anticancer drugs. However, there are many criteria to consider in validating MMPs as drug targets and for the development of MMP inhibitors. The inhibition of some MMPs could have pro-tumorigenic effects (making them anti-targets), counterbalancing the benefits of target inhibition. These effects might partially account for the failure of MMP inhibitors in clinical trials. What are the major challenges in MMP target validation and MMP-inhibitor-drug development?
                Bookmark

                Author and article information

                Contributors
                49-431-8807118 , 49-431-8805007 , cbeckerpauly@biochem.uni-kiel.de
                Journal
                Cell Mol Life Sci
                Cell. Mol. Life Sci
                Cellular and Molecular Life Sciences
                SP Birkhäuser Verlag Basel (Basel )
                1420-682X
                1420-9071
                1 September 2012
                1 September 2012
                January 2013
                : 70
                : 2
                : 309-333
                Affiliations
                [ ]Institute of Biochemistry, Christian-Albrechts-University, 24118 Kiel, Germany
                [ ]Institute of Molecular Health Sciences, Swiss Federal Institute of Technology Zurich, ETH Hoenggerberg, HPM D24, Zurich, Switzerland
                [ ]Departments of Oral Biological and Medical Sciences and Biochemistry and Molecular Biology, Centre for Blood Research, University of British Columbia, Vancouver, BC Canada
                [ ]Institute of Pharmacy and Biochemistry, Johannes Gutenberg-University, Mainz, Germany
                [ ]Institute of Physiology and Pathophysiology, University Medical Center, Johannes Gutenberg-University, Mainz, Germany
                [ ]Cell and Matrix Biology, Johannes Gutenberg University, Mainz, Germany
                [ ]Institute of Pathobiochemistry, University Medical Center, Johannes Gutenberg-University, Mainz, Germany
                [ ]Clinical Research Unit, Department of Obstetrics and Gynecology, Technical University of Munich, Munich, Germany
                [ ]Institute of Biochemistry and Molecular Medicine, University of Bern, Bern, Switzerland
                [ ]Department of Biochemistry and Molecular Biology, The Pennsylvania State University College of Medicine, Hershey, PA USA
                [ ]Department of Experimental Therapeutics, M.D. Anderson Cancer Center, The University of Texas, Houston, TX USA
                [ ]Department of Dermatology, University Hospital Münster, Münster, Germany
                [ ]Unit for Degradomics of the Protease Web, Christian-Albrechts-University, Rudolf-Höber-Str. 1, 24118 Kiel, Germany
                Article
                1106
                10.1007/s00018-012-1106-2
                3535375
                22940918
                730e7b44-a4c6-46b0-b13d-bfa3622acf05
                © The Author(s) 2012
                History
                : 17 April 2012
                : 19 July 2012
                : 23 July 2012
                Categories
                Research Article
                Custom metadata
                © Springer Basel 2013

                Molecular biology
                adam10,degradome,meprin,metalloproteases,proteomics,tails
                Molecular biology
                adam10, degradome, meprin, metalloproteases, proteomics, tails

                Comments

                Comment on this article