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      Postglacial Recolonization of the Southern Ocean by Elephant Seals Occurred From Multiple Glacial Refugia

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          ABSTRACT

          The Southern Ocean is warming more rapidly than other parts of our planet. How this region's endemic biodiversity will respond to such changes can be illuminated by studying past events through genetic analyses of time‐series data sets, including historic and fossil remains. Archaeological and subfossil remains show that the southern elephant seal ( Mirounga leonina ) was common along the coasts of Australia and New Zealand in the recent past. This species is now mostly confined to sub‐Antarctic islands and the southern tip of South America. We analyzed ancient seal samples from Australia (Tasmania), New Zealand and the Antarctic mainland to examine how southern elephant seals have responded to a changing climate and anthropogenic pressures during the Holocene. Our analyses show that these seals formed part of a broader Australasian lineage, comprising seals from all sampled locations from the south Pacific sector of the Southern Ocean. Our study demonstrates that southern elephant seal populations have dynamically altered both range and population sizes under climatic and human pressures over surprisingly short evolutionary timeframes for such a large, long‐lived mammal.

          Abstract

          Genetic data, alongside historic, archaeological, and subfossil remains, show that Australasian populations of the southern elephant seal have been shaped by range expansions and contractions following the Last Glacial Maximum, with subsequent contractions during the late Holocene. These expansion and contraction events are likely to have been a direct result of climate change‐induced habitat expansion and contraction, along with Indigenous and industrial European sealing. Prehistoric climate change and more recent human pressures have substantially altered the geographic distribution and population size of southern elephant seals over short evolutionary timescales.

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          Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

          Abstract Bayesian inference of phylogeny using Markov chain Monte Carlo (MCMC) plays a central role in understanding evolutionary history from molecular sequence data. Visualizing and analyzing the MCMC-generated samples from the posterior distribution is a key step in any non-trivial Bayesian inference. We present the software package Tracer (version 1.7) for visualizing and analyzing the MCMC trace files generated through Bayesian phylogenetic inference. Tracer provides kernel density estimation, multivariate visualization, demographic trajectory reconstruction, conditional posterior distribution summary, and more. Tracer is open-source and available at http://beast.community/tracer.
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            Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

            Abstract The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package has become a primary tool for Bayesian phylogenetic and phylodynamic inference from genetic sequence data. BEAST unifies molecular phylogenetic reconstruction with complex discrete and continuous trait evolution, divergence-time dating, and coalescent demographic models in an efficient statistical inference engine using Markov chain Monte Carlo integration. A convenient, cross-platform, graphical user interface allows the flexible construction of complex evolutionary analyses.
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              The impact of climate change on the world's marine ecosystems.

              Marine ecosystems are centrally important to the biology of the planet, yet a comprehensive understanding of how anthropogenic climate change is affecting them has been poorly developed. Recent studies indicate that rapidly rising greenhouse gas concentrations are driving ocean systems toward conditions not seen for millions of years, with an associated risk of fundamental and irreversible ecological transformation. The impacts of anthropogenic climate change so far include decreased ocean productivity, altered food web dynamics, reduced abundance of habitat-forming species, shifting species distributions, and a greater incidence of disease. Although there is considerable uncertainty about the spatial and temporal details, climate change is clearly and fundamentally altering ocean ecosystems. Further change will continue to create enormous challenges and costs for societies worldwide, particularly those in developing countries.
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                Author and article information

                Contributors
                nic.rawlence@otago.ac.nz
                m.debruyn@griffith.edu.au
                Journal
                Glob Chang Biol
                Glob Chang Biol
                10.1111/(ISSN)1365-2486
                GCB
                Global Change Biology
                John Wiley and Sons Inc. (Hoboken )
                1354-1013
                1365-2486
                07 March 2025
                March 2025
                : 31
                : 3 ( doiID: 10.1111/gcb.v31.3 )
                : e70101
                Affiliations
                [ 1 ] School of Life and Environmental Sciences University of Sydney Sydney Australia
                [ 2 ] Otago Palaeogenetics Laboratory, Department of Zoology University of Otago Dunedin New Zealand
                [ 3 ] Trace and Environmental DNA Laboratory, School of Molecular and Life Sciences Curtin University Perth Australia
                [ 4 ] Lundbeck Foundation GeoGenetics Centre, Globe Institute University of Copenhagen Copenhagen Denmark
                [ 5 ] Department of Biosciences Durham University Durham UK
                [ 6 ] Southern Pacific Archaeological Research, School of Social Sciences University of Otago Dunedin New Zealand
                [ 7 ] Coastal People Southern Skies, National Centre of Research Excellence University of Otago Dunedin New Zealand
                [ 8 ] School of Social Sciences University of Queensland Brisbane Australia
                [ 9 ] Department of Anatomy University of Otago Dunedin New Zealand
                [ 10 ] School of Environmental and Natural Sciences Bangor University Bangor UK
                [ 11 ] Department of Zoology University of Cambridge Cambridge UK
                [ 12 ] Department of Conservation Conservation House Wellington New Zealand
                [ 13 ] Archaeology and Natural History, College of Asia and the Pacific Australian National University Canberra Australia
                [ 14 ] School of Earth and Climate Sciences and the Climate Change Institute University of Maine Orono Maine USA
                [ 15 ] Department of Earth and Planetary Sciences University of California Santa Cruz California USA
                [ 16 ] Dipartimento di Scienze Della Terra Università Degli Studi di Pisa, Instituto di Geoscienze e Georisorse, IGGCNR Pisa Italy
                [ 17 ] Discipline of Archaeology, School of Humanities University of Sydney Sydney Australia
                [ 18 ] Australian Research Centre for Human Evolution, School of Environment and Science Griffith University Brisbane Australia
                Author notes
                [*] [* ] Correspondence:

                Nicolas J. Rawlence ( nic.rawlence@ 123456otago.ac.nz )

                Mark de Bruyn ( m.debruyn@ 123456griffith.edu.au )

                Author information
                https://orcid.org/0000-0002-1514-7916
                https://orcid.org/0000-0002-0361-2307
                https://orcid.org/0000-0003-1528-9604
                Article
                GCB70101 GCB-24-2861.R1
                10.1111/gcb.70101
                11886770
                40052289
                72949248-2da6-45fc-9ec5-3bee87168cae
                Global Change Biology© 2025 The Author(s). Global Change Biology published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 01 December 2024
                : 02 October 2024
                : 05 December 2024
                Page count
                Figures: 5, Tables: 1, Pages: 11, Words: 8400
                Funding
                Funded by: Office of Polar Programs, U.S. National Science Foundation. , doi 10.13039/100000087;
                Funded by: Australian Research Council Future Fellowship
                Award ID: FT200100464
                Categories
                Research Article
                Research Article
                Custom metadata
                2.0
                March 2025
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.5.4 mode:remove_FC converted:07.03.2025

                ancient dna,extinct population,mitogenome,phylogenetics
                ancient dna, extinct population, mitogenome, phylogenetics

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