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      Environmental magnesium ion affects global gene expression, motility, biofilm formation and virulence of Vibrio parahaemolyticus

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          Abstract

          Vibrio parahaemolyticus is widely distributed in marine ecosystems. Magnesium ion (Mg 2+) is the second most abundant metal cation in seawater, and plays important roles in the growth and gene expression of V. parahaemolyticus, but lacks the detailed mechanisms. In this study, the RNA sequencing data demonstrated that a total of 1494 genes was significantly regulated by Mg 2+. The majority of the genes associated with lateral flagella, exopolysaccharide, type III secretion system 2, type VI secretion system (T6SS) 1, T6SS2, and thermostable direct hemolysin were downregulated. A total of 18 genes that may be involved in c-di-GMP metabolism and more than 80 genes encoding putative regulators were also significantly and differentially expressed in response to Mg 2+, indicating that the adaptation process to Mg 2+ stress may be strictly regulated by complex regulatory networks. In addition, Mg 2+ promoted the proliferative speed, swimming motility and cell adhesion of V. parahaemolyticus, but inhibited the swarming motility, biofilm formation, and c-di-GMP production. However, Mg 2+ had no effect on the production of capsular polysaccharide and cytoxicity against HeLa cells. Therefore, Mg 2+ had a comprehensive impact on the physiology and gene expression of V. parahaemolyticus.

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            High-throughput sequencing assays such as RNA-Seq, ChIP-Seq or barcode counting provide quantitative readouts in the form of count data. To infer differential signal in such data correctly and with good statistical power, estimation of data variability throughout the dynamic range and a suitable error model are required. We propose a method based on the negative binomial distribution, with variance and mean linked by local regression and present an implementation, DESeq, as an R/Bioconductor package.
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              The biofilm matrix.

              The microorganisms in biofilms live in a self-produced matrix of hydrated extracellular polymeric substances (EPS) that form their immediate environment. EPS are mainly polysaccharides, proteins, nucleic acids and lipids; they provide the mechanical stability of biofilms, mediate their adhesion to surfaces and form a cohesive, three-dimensional polymer network that interconnects and transiently immobilizes biofilm cells. In addition, the biofilm matrix acts as an external digestive system by keeping extracellular enzymes close to the cells, enabling them to metabolize dissolved, colloidal and solid biopolymers. Here we describe the functions, properties and constituents of the EPS matrix that make biofilms the most successful forms of life on earth.
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                Author and article information

                Contributors
                Journal
                Biofilm
                Biofilm
                Biofilm
                Elsevier
                2590-2075
                28 March 2024
                June 2024
                28 March 2024
                : 7
                : 100194
                Affiliations
                [a ]Department of Clinical Laboratory, Affiliated Nantong Hospital 3 of Nantong University, Nantong Third People's Hospital, Nantong, 226006, Jiangsu, China
                [b ]Department of Respiratory Medicine, Affiliated Nantong Hospital 3 of Nantong University, Nantong Third People's Hospital, Nantong, 226006, Jiangsu, China
                [c ]Department of Infection, Affiliated Nantong Hospital 3 of Nantong University, Nantong Third People's Hospital, Nantong, 226006, Jiangsu, China
                Author notes
                [* ]Corresponding author. zhangyiquanq@ 123456163.com
                [** ]Corresponding author. lxj009650@ 123456sina.com
                [*** ]Corresponding author. rainman78@ 123456163.com
                [1]

                These authors contributed equally to this work.

                Article
                S2590-2075(24)00019-4 100194
                10.1016/j.bioflm.2024.100194
                10990858
                38577556
                70171725-7def-4e3c-a1fa-38b9132fdde8
                © 2024 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 2 February 2024
                : 25 March 2024
                : 26 March 2024
                Categories
                Article

                vibrio parahaemolyticus,mg2+,motility,biofilm,virulence,gene expression

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