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      The oncogene EVI1 enhances transcriptional and biological responses of human myeloid cells to all-trans retinoic acid

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          Abstract

          The product of the ecotropic virus integration site 1 ( EVI1) gene, whose overexpression is associated with a poor prognosis in myeloid leukemias and some epithelial tumors, regulates gene transcription both through direct DNA binding and through modulation of the activity of other sequence specific transcription factors. Previous results from our laboratory have shown that EVI1 influenced transcription regulation in response to the myeloid differentiation inducing agent, all-trans retinoic acid (ATRA), in a dual manner: it enhanced ATRA induced transcription of the RARβ gene, but repressed the ATRA induction of the EVI1 gene itself. In the present study, we asked whether EVI1 would modulate the ATRA regulation of a larger number of genes, as well as biological responses to this agent, in human myeloid cells. U937 and HL-60 cells ectopically expressing EVI1 through retroviral transduction were subjected to microarray based gene expression analysis, and to assays measuring cellular proliferation, differentiation, and apoptosis. These experiments showed that EVI1 modulated the ATRA response of several dozens of genes, and in fact reinforced it in the vast majority of cases. A particularly strong synergy between EVI1 and ATRA was observed for GDF15, which codes for a member of the TGF-β superfamily of cytokines. In line with the gene expression results, EVI1 enhanced cell cycle arrest, differentiation, and apoptosis in response to ATRA, and knockdown of GDF15 counteracted some of these effects. The potential clinical implications of these findings are discussed.

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          Most cited references86

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          Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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            An optimized microRNA backbone for effective single-copy RNAi.

            Short hairpin RNA (shRNA) technology enables stable and regulated gene repression. For establishing experimentally versatile RNAi tools and minimizing toxicities, synthetic shRNAs can be embedded into endogenous microRNA contexts. However, due to our incomplete understanding of microRNA biogenesis, such "shRNAmirs" often fail to trigger potent knockdown, especially when expressed from a single genomic copy. Following recent advances in design of synthetic shRNAmir stems, here we take a systematic approach to optimize the experimental miR-30 backbone. Among several favorable features, we identify a conserved element 3' of the basal stem as critically required for optimal shRNAmir processing and implement it in an optimized backbone termed "miR-E", which strongly increases mature shRNA levels and knockdown efficacy. Existing miR-30 reagents can be easily converted to miR-E, and its combination with up-to-date design rules establishes a validated and accessible platform for generating effective single-copy shRNA libraries that will facilitate the functional annotation of the genome. Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.
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              Nuclear retinoid receptors and the transcription of retinoid-target genes.

              The pleiotropic effects of retinoids are mediated by nuclear retinoid receptors (RARs and RXRs) which are ligand-activated transcription factors. In response to retinoid binding, RAR/RXR heterodimers undergo major conformational changes and orchestrate the transcription of specific gene networks, through binding to specific DNA response elements and recruiting cofactor complexes that act to modify local chromatin structure and/or engage the basal transcription machinery. Then the degradation of RARs and RXRs by the ubiquitin-proteasome controls the magnitude and the duration of the retinoid response. RARs and RXRs also integrate a variety of signaling pathways through phosphorylation events which cooperate with the ligand for the control of retinoid-target genes transcription. These different modes of regulation reveal unexpected levels of complexity in the dynamics of retinoid-dependent transcription.
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                Author and article information

                Journal
                Cell Cycle
                Cell Cycle
                KCCY
                Cell Cycle
                Taylor & Francis
                1538-4101
                1551-4005
                15 September 2014
                30 October 2014
                : 13
                : 18
                : 2931-2943
                Affiliations
                [1 ]Department of Medicine I; Medical University of Vienna ; Währinger Gürtel, Vienna, Austria
                [2 ]Comprehensive Cancer Center; Medical University of Vienna ; Währinger Gürtel, Vienna, Austria
                [3 ]Biocenter; Division of Bioinformatics; Innsbruck Medical University ; Innrain, Innsbruck, Austria
                [4 ]Department of Cytokinetics; Institute of Biophysics; Academy of Sciences of the Czech Republic ; Královopolská, Brno, Czech Republic
                [5 ]Center of Biomolecular and Cellular Engineering; International Clinical Research Center; St. Anne's University Hospital Brno ; Pekařská, Brno, Czech Republic
                [6 ]Department of Laboratory Medicine; Medical University of Vienna ; Währinger Gürtel, Vienna, Austria
                [7 ]Masaryk University; Faculty of Science; Department of Biochemistry ; Kotlářská, Brno, Czech Republic
                [8 ]Core Facility Flow Cytometry & Surgical Research Laboratories; Medical University of Vienna ; Währinger Gürtel, Vienna, Austria
                []Present address: Department of Laboratory Medicine; Medical University of Vienna ; Währinger Gürtel, Vienna, Austria
                Author notes
                [* ]Correspondence to: Rotraud Wieser; Email: rotraud.wieser@ 123456meduniwien.ac.at
                Article
                946869
                10.4161/15384101.2014.946869
                4613657
                25486480
                6f139a60-be47-4abf-aebc-985e1b2e6c58
                © 2014 The Author(s). Published with license by Taylor & Francis Group, LLC© Birgit Steinmetz, Hubert Hackl, Eva Slabáková, Ilse Schwarzinger, Monika Smějová, Andreas Spittler, Itziar Arbesu, Medhat Shehata, Karel Souček, and Rotraud Wieser

                This is an Open Access article distributed under the terms of the Creative Commons Attribution-Non-Commercial License ( http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The moral rights of the named author(s) have been asserted.

                History
                : 19 December 2013
                : 24 June 2014
                : 25 June 2014
                Page count
                Figures: 7, Tables: 0, References: 89, Pages: 13
                Funding
                This work was supported by the Austrian Science Foundation, grant no P21401-B12 to RW, the Ministry of Health of the Czech Republic, grant no IGA MZD NT13573–4/2012 to KS, the Czech Science Foundation, grant no GA CR P301/12/P407 to ES, and the European Regional Development Fund, grant FNUSA-ICRC (no. CZ.1.05/1.1.00/02.0123) to KS.
                Categories
                Reports

                Cell biology
                apoptosis,cell cycle,evi1,all-trans retinoic acid,gdf15,gene expression profiling,myeloid differentiation

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