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      Pleiotropic contribution of rbfox1 to psychiatric and neurodevelopmental phenotypes in a zebrafish model

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          Abstract

          RBFOX1 is a highly pleiotropic gene that contributes to several psychiatric and neurodevelopmental disorders. Both rare and common variants in RBFOX1 have been associated with several psychiatric conditions, but the mechanisms underlying the pleiotropic effects of RBFOX1 are not yet understood. Here we found that, in zebrafish, rbfox1 is expressed in spinal cord, mid- and hindbrain during developmental stages. In adults, expression is restricted to specific areas of the brain, including telencephalic and diencephalic regions with an important role in receiving and processing sensory information and in directing behaviour. To investigate the effect of rbfox1 deficiency on behaviour, we used rbfox1 sa15940, a rbfox1 loss-of-function line. We found that rbfox1 sa15940 mutants present hyperactivity, thigmotaxis, decreased freezing behaviour and altered social behaviour. We repeated these behavioural tests in a second rbfox1 loss-of-function line with a different genetic background, rbfox1 del19, and found that rbfox1 deficiency affects behaviour similarly in this line, although there were some differences. rbfox1 del19 mutants present similar thigmotaxis, but stronger alterations in social behaviour and lower levels of hyperactivity than rbfox1 sa15940 fish. Taken together, these results suggest that rbfox1 deficiency leads to multiple behavioural changes in zebrafish that might be modulated by environmental, epigenetic and genetic background effects, and that resemble phenotypic alterations present in Rbfox1-deficient mice and in patients with different psychiatric conditions. Our study thus highlights the evolutionary conservation of rbfox1 function in behaviour and paves the way to further investigate the mechanisms underlying rbfox1 pleiotropy on the onset of neurodevelopmental and psychiatric disorders.

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          Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

          The two most commonly used methods to analyze data from real-time, quantitative PCR experiments are absolute quantification and relative quantification. Absolute quantification determines the input copy number, usually by relating the PCR signal to a standard curve. Relative quantification relates the PCR signal of the target transcript in a treatment group to that of another sample such as an untreated control. The 2(-Delta Delta C(T)) method is a convenient way to analyze the relative changes in gene expression from real-time quantitative PCR experiments. The purpose of this report is to present the derivation, assumptions, and applications of the 2(-Delta Delta C(T)) method. In addition, we present the derivation and applications of two variations of the 2(-Delta Delta C(T)) method that may be useful in the analysis of real-time, quantitative PCR data. Copyright 2001 Elsevier Science (USA).
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                Author and article information

                Journal
                bioRxiv
                BIORXIV
                bioRxiv
                Cold Spring Harbor Laboratory
                23 February 2023
                : 2023.02.23.529711
                Affiliations
                [1 ]Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia, Universitat de Barcelona, Barcelona, Catalunya, 08028, Spain
                [2 ]Centro de Investigación Biomédica en Red de Enfermedades raras (CIBERER), Spain
                [3 ]Institut de Biomedicina de la Universitat de Barcelona, Barcelona, Catalunya, 08028, Spain
                [4 ]Institut de recerca Sant Joan de Déu, Espluges de Llobregat, Catalunya, 08950, Spain
                [5 ]Department of Psychiatry, Psychosomatic Medicine and Psychotherapy, University Hospital Frankfurt, Goethe University, Frankfurt am Main, Germany
                [6 ]Faculty of Biological Sciences, Goethe University Frankfurt, Frankfurt am Main, Germany
                [7 ]School of Biological and Behavioural Sciences, Queen Mary University of London, London E1 4NS, UK
                [8 ]Icahn School of Medicine, Mount Sinai, NYC 10029, USA
                [9 ]Centre for Genomic Regulation, Barcelona Institute of Science and Technology, 08003 Barcelona, Spain.
                [10 ]Universitat Pompeu Fabra, Barcelona, Spain.
                [11 ]ICREA, Barcelona, Spain
                [12 ]Department of Genetics and Genome Biology, College of Life Sciences, University of Leicester, Leicester, LE1 7RH, United Kingdom
                Author notes
                [*]

                equally supervised this work

                AUTHORS CONTRIBUTION

                N.F-C. and B.C. conceived and coordinated the study. N.F-C. and B.C. designed the experimental approaches for the behavioural experiments. E.A-G. designed and conducted the behavioural experiments, contributed to the characterization of the loss-of-function lines and wrote the paper. M.A. conducted the second batch of behavioral experiments. J.G-G. designed and performed the CRISPR/Cas9 experiment. A.L. designed and conducted the ISH experiments and contributed to the characterization of the loss-of-function lines. L.L-B. and M.I. contributed to the behavioural experiments. W.H.J.N contributed to the design of the behavioural experiments. CH.B. supervised the CRISPR/Cas9, ISH and qPCR experiments. All authors discussed and commented on the manuscript.

                Corresponding authors: Bru Cormand, bcormand@ 123456ub.edu , Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia, Universitat de Barcelona, Barcelona, Catalunya, 08028, Spain, Tel: +34 934021013. Noèlia Fernàndez-Castillo, noefernandez@ 123456ub.edu , Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia, Universitat de Barcelona, Barcelona, Catalunya, 08028, Spain, Tel: +34 934037082.
                Article
                10.1101/2023.02.23.529711
                9980121
                36865197
                6bcbdbbf-2105-4343-9a97-62300a62f992

                This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.

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