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      An artificial intelligence system for predicting the deterioration of COVID-19 patients in the emergency department

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          Abstract

          During the coronavirus disease 2019 (COVID-19) pandemic, rapid and accurate triage of patients at the emergency department is critical to inform decision-making. We propose a data-driven approach for automatic prediction of deterioration risk using a deep neural network that learns from chest X-ray images and a gradient boosting model that learns from routine clinical variables. Our AI prognosis system, trained using data from 3661 patients, achieves an area under the receiver operating characteristic curve (AUC) of 0.786 (95% CI: 0.745–0.830) when predicting deterioration within 96 hours. The deep neural network extracts informative areas of chest X-ray images to assist clinicians in interpreting the predictions and performs comparably to two radiologists in a reader study. In order to verify performance in a real clinical setting, we silently deployed a preliminary version of the deep neural network at New York University Langone Health during the first wave of the pandemic, which produced accurate predictions in real-time. In summary, our findings demonstrate the potential of the proposed system for assisting front-line physicians in the triage of COVID-19 patients.

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          Prediction models for diagnosis and prognosis of covid-19 infection: systematic review and critical appraisal

          Abstract Objective To review and critically appraise published and preprint reports of prediction models for diagnosing coronavirus disease 2019 (covid-19) in patients with suspected infection, for prognosis of patients with covid-19, and for detecting people in the general population at risk of being admitted to hospital for covid-19 pneumonia. Design Rapid systematic review and critical appraisal. Data sources PubMed and Embase through Ovid, Arxiv, medRxiv, and bioRxiv up to 24 March 2020. Study selection Studies that developed or validated a multivariable covid-19 related prediction model. Data extraction At least two authors independently extracted data using the CHARMS (critical appraisal and data extraction for systematic reviews of prediction modelling studies) checklist; risk of bias was assessed using PROBAST (prediction model risk of bias assessment tool). Results 2696 titles were screened, and 27 studies describing 31 prediction models were included. Three models were identified for predicting hospital admission from pneumonia and other events (as proxy outcomes for covid-19 pneumonia) in the general population; 18 diagnostic models for detecting covid-19 infection (13 were machine learning based on computed tomography scans); and 10 prognostic models for predicting mortality risk, progression to severe disease, or length of hospital stay. Only one study used patient data from outside of China. The most reported predictors of presence of covid-19 in patients with suspected disease included age, body temperature, and signs and symptoms. The most reported predictors of severe prognosis in patients with covid-19 included age, sex, features derived from computed tomography scans, C reactive protein, lactic dehydrogenase, and lymphocyte count. C index estimates ranged from 0.73 to 0.81 in prediction models for the general population (reported for all three models), from 0.81 to more than 0.99 in diagnostic models (reported for 13 of the 18 models), and from 0.85 to 0.98 in prognostic models (reported for six of the 10 models). All studies were rated at high risk of bias, mostly because of non-representative selection of control patients, exclusion of patients who had not experienced the event of interest by the end of the study, and high risk of model overfitting. Reporting quality varied substantially between studies. Most reports did not include a description of the study population or intended use of the models, and calibration of predictions was rarely assessed. Conclusion Prediction models for covid-19 are quickly entering the academic literature to support medical decision making at a time when they are urgently needed. This review indicates that proposed models are poorly reported, at high risk of bias, and their reported performance is probably optimistic. Immediate sharing of well documented individual participant data from covid-19 studies is needed for collaborative efforts to develop more rigorous prediction models and validate existing ones. The predictors identified in included studies could be considered as candidate predictors for new models. Methodological guidance should be followed because unreliable predictions could cause more harm than benefit in guiding clinical decisions. Finally, studies should adhere to the TRIPOD (transparent reporting of a multivariable prediction model for individual prognosis or diagnosis) reporting guideline. Systematic review registration Protocol https://osf.io/ehc47/, registration https://osf.io/wy245.
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            Automated detection of COVID-19 cases using deep neural networks with X-ray images

            The novel coronavirus 2019 (COVID-2019), which first appeared in Wuhan city of China in December 2019, spread rapidly around the world and became a pandemic. It has caused a devastating effect on both daily lives, public health, and the global economy. It is critical to detect the positive cases as early as possible so as to prevent the further spread of this epidemic and to quickly treat affected patients. The need for auxiliary diagnostic tools has increased as there are no accurate automated toolkits available. Recent findings obtained using radiology imaging techniques suggest that such images contain salient information about the COVID-19 virus. Application of advanced artificial intelligence (AI) techniques coupled with radiological imaging can be helpful for the accurate detection of this disease, and can also be assistive to overcome the problem of a lack of specialized physicians in remote villages. In this study, a new model for automatic COVID-19 detection using raw chest X-ray images is presented. The proposed model is developed to provide accurate diagnostics for binary classification (COVID vs. No-Findings) and multi-class classification (COVID vs. No-Findings vs. Pneumonia). Our model produced a classification accuracy of 98.08% for binary classes and 87.02% for multi-class cases. The DarkNet model was used in our study as a classifier for the you only look once (YOLO) real time object detection system. We implemented 17 convolutional layers and introduced different filtering on each layer. Our model (available at (https://github.com/muhammedtalo/COVID-19)) can be employed to assist radiologists in validating their initial screening, and can also be employed via cloud to immediately screen patients.
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              CoroNet: A Deep Neural Network for Detection and Diagnosis of COVID-19 from Chest X-ray Images

              Highlights • Classification of Normal, Pneumonia-bacterial, Pneumonia-viral and Covid-19 chest x-ray images. • Presented a Deep Convolutional Neural Network Model based on Xception architecture. • Used a transfer learning method to initialize model by weight parameters learned on large-scale datasets. • Trained the model on a dataset prepared by collecting x-ray images from publically available databases. • Achieved an overall accuracy of 89.6% and precision and recall rate for Covid-19 cases are 93% and 98.2%. The results obtained by our proposed model are superior compared to other studies in the literature • Promising results indicate that this model can be very helpful to doctors around the world in their fight against Covid-19 Pandemic.
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                Author and article information

                Contributors
                k.j.geras@nyu.edu
                Journal
                NPJ Digit Med
                NPJ Digit Med
                NPJ Digital Medicine
                Nature Publishing Group UK (London )
                2398-6352
                12 May 2021
                12 May 2021
                2021
                : 4
                : 80
                Affiliations
                [1 ]GRID grid.440573.1, Engineering Division, , NYU Abu Dhabi, ; Abu Dhabi, UAE
                [2 ]GRID grid.137628.9, ISNI 0000 0004 1936 8753, Center for Data Science, , New York University, ; New York, NY USA
                [3 ]GRID grid.137628.9, ISNI 0000 0004 1936 8753, Department of Radiology, , NYU Langone Health, ; New York, NY USA
                [4 ]GRID grid.137628.9, ISNI 0000 0004 1936 8753, Vilcek Institute of Graduate Biomedical Sciences, , NYU Grossman School of Medicine, ; New York, NY USA
                [5 ]GRID grid.137628.9, ISNI 0000 0004 1936 8753, Center for Advanced Imaging Innovation and Research, , NYU Langone Health, ; New York, NY USA
                [6 ]GRID grid.137628.9, ISNI 0000 0004 1936 8753, Department of Population Health, , NYU Langone Health, ; New York, NY USA
                [7 ]GRID grid.137628.9, ISNI 0000 0004 1936 8753, Department of Medicine, , NYU Langone Health, ; New York, NY USA
                [8 ]GRID grid.482020.c, ISNI 0000 0001 1089 179X, Department of Mathematics, , Courant Institute, New York University, ; New York, NY USA
                Author information
                http://orcid.org/0000-0002-9717-1302
                http://orcid.org/0000-0001-9284-4830
                http://orcid.org/0000-0003-2386-7849
                http://orcid.org/0000-0002-3658-8956
                http://orcid.org/0000-0002-9984-9164
                http://orcid.org/0000-0001-8605-5392
                http://orcid.org/0000-0001-7039-8606
                http://orcid.org/0000-0003-0549-1446
                Article
                453
                10.1038/s41746-021-00453-0
                8115328
                33980980
                6af05ef5-cb68-4181-9abf-92327f092b36
                © The Author(s) 2021

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 4 November 2020
                : 19 March 2021
                Funding
                Funded by: NYU Abu Dhabi
                Funded by: FundRef https://doi.org/10.13039/100000001, National Science Foundation (NSF);
                Award ID: HDR-1922658
                Award ID: HDR-1922658
                Award ID: HDR-1922658
                Award ID: HDR-1922658
                Award ID: HDR-1922658
                Award ID: HDR-1922658
                Award ID: HDR-1940097
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100000002, U.S. Department of Health & Human Services | National Institutes of Health (NIH);
                Award ID: R01LM013316
                Award Recipient :
                Categories
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                © The Author(s) 2021

                radiography,computational science,biomedical engineering,computer science

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