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      Differential diagnosis of thyroid nodule capsules using random forest guided selection of image features

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          Abstract

          Microscopic evaluation of tissue sections stained with hematoxylin and eosin is the current gold standard for diagnosing thyroid pathology. Digital pathology is gaining momentum providing the pathologist with additional cues to traditional routes when placing a diagnosis, therefore it is extremely important to develop new image analysis methods that can extract image features with diagnostic potential. In this work, we use histogram and texture analysis to extract features from microscopic images acquired on thin thyroid nodule capsules sections and demonstrate how they enable the differential diagnosis of thyroid nodules. Targeted thyroid nodules are benign (i.e., follicular adenoma) and malignant (i.e., papillary thyroid carcinoma and its sub-type arising within a follicular adenoma). Our results show that the considered image features can enable the quantitative characterization of the collagen capsule surrounding thyroid nodules and provide an accurate classification of the latter’s type using random forest.

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          Most cited references39

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          NIH Image to ImageJ: 25 years of image analysis

          For the past twenty five years the NIH family of imaging software, NIH Image and ImageJ have been pioneers as open tools for scientific image analysis. We discuss the origins, challenges and solutions of these two programs, and how their history can serve to advise and inform other software projects.
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            Random Forests

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              ilastik: interactive machine learning for (bio)image analysis

              We present ilastik, an easy-to-use interactive tool that brings machine-learning-based (bio)image analysis to end users without substantial computational expertise. It contains pre-defined workflows for image segmentation, object classification, counting and tracking. Users adapt the workflows to the problem at hand by interactively providing sparse training annotations for a nonlinear classifier. ilastik can process data in up to five dimensions (3D, time and number of channels). Its computational back end runs operations on-demand wherever possible, allowing for interactive prediction on data larger than RAM. Once the classifiers are trained, ilastik workflows can be applied to new data from the command line without further user interaction. We describe all ilastik workflows in detail, including three case studies and a discussion on the expected performance.
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                Author and article information

                Contributors
                radu.hristu@upb.ro
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                14 December 2022
                14 December 2022
                2022
                : 12
                : 21636
                Affiliations
                [1 ]GRID grid.4551.5, ISNI 0000 0001 2109 901X, Center for Microscopy-Microanalysis and Information Processing, , University Politehnica of Bucharest, ; 313 Splaiul Independentei, 060042 Bucharest, Romania
                [2 ]Pathology Department, Central University Emergency Military Hospital, 134 Calea Plevnei, 010825 Bucharest, Romania
                [3 ]Department of Special Motricity and Medical Recovery, The National University of Physical Education and Sports, 140 Constantin Noica, 060057 Bucharest, Romania
                [4 ]GRID grid.462385.e, ISNI 0000 0004 1775 4538, Department of Computer Science and Engineering, , Indian Institute of Technology Jodhpur, ; Jodhpur, India
                [5 ]GRID grid.4551.5, ISNI 0000 0001 2109 901X, Faculty of Energetics, , University Politehnica of Bucharest, ; 313 Splaiul Independentei, 060042 Bucharest, Romania
                Article
                25788
                10.1038/s41598-022-25788-w
                9751070
                36517531
                6a9faadd-da15-444c-ae6a-acec82c7fc77
                © The Author(s) 2022

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 24 May 2022
                : 5 December 2022
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100006595, Unitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si Inovarii;
                Award ID: PN-III-P1-1.1-TE-2019-1756 (SHGThyPath)
                Award ID: PN-III-P1-1.1-TE-2019-1756 (SHGThyPath)
                Award ID: PN-III-P1-1.1-TE-2019-1756 (SHGThyPath)
                Award ID: PN-III-P1-1.1-TE-2019-1756 (SHGThyPath)
                Award ID: PN-III-P1-1.1-TE-2019-1756 (SHGThyPath)
                Categories
                Article
                Custom metadata
                © The Author(s) 2022

                Uncategorized
                thyroid gland,thyroid cancer,imaging techniques
                Uncategorized
                thyroid gland, thyroid cancer, imaging techniques

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