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      Association study of the polymorphisms rs2228611 of the DNMT1 gene and rs1569686 of the DNMT3B gene with bladder cancer development in a sample of the Algerian population

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          Abstract

          Bladder cancer (BC) is a multifactorial disease with a poorly understood main cause. In this study, we aimed to evaluate the effect of the polymorphisms rs2228611 of the DNMT1 gene and rs1569686 of the DNMT3B gene on the susceptibility to develop Bladder Cancer in the Algerian population. A case-control study design was adopted, with DNA samples of 114 BC patients and 123 healthy controls. We found that the rs2228611 of the DNMT1 gene was strongly associated with an increased risk of BC development under genetic models: Codominant AG vs. GG (OR=2.54, 95% CI=1.21-5.51, adj p=0.015) and dominant AA+AG vs. GG (OR=2.24, 95% CI=1.12-4.60, adj p=0.023). However, no statistically significant association was observed between the rs1569686 of the DNMT3B gene and the predisposition to BC. To the best of our knowledge, this is the first peer-reviewed study to evaluate the effect of the rs2228611 polymorphism on bladder cancer occurrence. Our results suggest that the rs2228611 might be a potential biomarker for BC development risk. Additional studies are needed to validate our findings.

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            mRNA degradation represents a critical regulated step in gene expression. Although the major pathways in turnover have been identified, accounting for disparate half-lives has been elusive. We show that codon optimality is one feature that contributes greatly to mRNA stability. Genome-wide RNA decay analysis revealed that stable mRNAs are enriched in codons designated optimal, whereas unstable mRNAs contain predominately non-optimal codons. Substitution of optimal codons with synonymous, non-optimal codons results in dramatic mRNA destabilization, whereas the converse substitution significantly increases stability. Further, we demonstrate that codon optimality impacts ribosome translocation, connecting the processes of translation elongation and decay through codon optimality. Finally, we show that optimal codon content accounts for the similar stabilities observed in mRNAs encoding proteins with coordinated physiological function. This work demonstrates that codon optimization exists as a mechanism to finely tune levels of mRNAs and, ultimately, proteins.
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              Epigenetics: definition, mechanisms and clinical perspective.

              A vast array of successive epigenetic modifications ensures the creation of a healthy individual. Crucial epigenetic reprogramming events occur during germ cell development and early embryogenesis in mammals. As highlighted by the large offspring syndrome with in vitro conceived ovine and bovine animals, any disturbance during germ cell development or early embryogenesis has the potential to alter epigenetic reprogramming. Therefore the complete array of human assisted reproductive technology (ART), starting from ovarian hormonal stimulation to embryo uterine transfer, could have a profound impact on the epigenetic state of human in vitro produced individuals. Although some investigators have suggested an increased incidence of epigenetic abnormalities in in vitro conceived children, other researchers have refuted these allegations. To date, multiple reasons can be hypothesized why irrefutable epigenetic alterations as a result of ART have not been demonstrated yet. Thieme Medical Publishers.
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                Author and article information

                Journal
                Mol Biol Res Commun
                Mol Biol Res Commun
                MBRC
                Molecular Biology Research Communications
                Shiraz University (Shiraz, Iran )
                2322-181X
                2345-2005
                2024
                : 13
                : 2
                : 65-72
                Affiliations
                [1 ]Université Des Sciences Et de La Technologie d’Oran Mohamed-Boudiaf USTOMB El Mnaouar, BP 1505, Bir El Djir, 31000 Oran, Algerie. Laboratoire Génétique Moléculaire Et Cellulaire (LGMC) USTOMB
                [2 ]Etablissement Hospitalier Universitaire d'Oran EHU 1 Novembre 1954, service Chirurgie Urologique, Oran, Algerie
                Author notes
                [* ]Corresponding Author: Université Des Sciences Et de La Technologie d’Oran Mohamed-Boudiaf USTOMB El Mnaouar, BP 1505, Bir El Djir, 31000 Oran, Algerie. Laboratoire de La Génétique Moléculaire Et Cellulaire (LGMC). Tel: +793 34 81 83; Fax: +213 041 62 71 60; Email: zohra.toualachaila@univ-usto.dz
                Article
                10.22099/MBRC.2023.48569.1881
                10946547
                38504781
                698d433b-d454-4075-9dd6-b0dae7400bf2

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License, ( http://creativecommons.org/licenses/by/3.0/) which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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                Original Article

                bladder cancer (bc),rs2228611,rs1569686,dnmt1,dnmt3b
                bladder cancer (bc), rs2228611, rs1569686, dnmt1, dnmt3b

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