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      Development of an assessment method for freely moving nonhuman primates’ eating behavior using manual and deep learning analysis

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          Abstract

          Purpose

          Although eating is imperative for survival, few comprehensive methods have been developed to assess freely moving nonhuman primates' eating behavior. In the current study, we distinguished eating behavior into appetitive and consummatory phases and developed nine indices to study them using manual and deep learning-based (DeepLabCut) techniques.

          Method

          The indices were utilized to three rhesus macaques by different palatability and hunger levels to validate their utility. To execute the experiment, we designed the eating behavior cage and manufactured the artificial food. The total number of trials was 3, with 1 trial conducted using natural food and 2 trials using artificial food.

          Result

          As a result, the indices of highest utility for hunger effect were approach frequency and consummatory duration. Appetitive composite score and consummatory duration showed the highest utility for palatability effect. To elucidate the effects of hunger and palatability, we developed 2D visualization plots based on manual indices. These 2D visualization methods could intuitively depict the palatability perception and hunger internal state. Furthermore, the developed deep learning-based analysis proved accurate and comparable with manual analysis. When comparing the time required for analysis, deep learning-based analysis was 24-times faster than manual analysis. Moreover, temporal and spatial dynamics were visualized via manual and deep learning-based analysis. Based on temporal dynamics analysis, the patterns were classified into four categories: early decline, steady decline, mid-peak with early incline, and late decline. Heatmap of spatial dynamics and trajectory-related visualization could elucidate a consumption posture and a higher spatial occupancy of food zone in hunger and with palatable food.

          Discussion

          Collectively, this study describes a newly developed and validated multi-phase method for assessing freely moving nonhuman primate eating behavior using manual and deep learning-based analyses. These effective tools will prove valuable in food reward (palatability effect) and homeostasis (hunger effect) research.

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          Most cited references61

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          DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

          Quantifying behavior is crucial for many applications in neuroscience. Videography provides easy methods for the observation and recording of animal behavior in diverse settings, yet extracting particular aspects of a behavior for further analysis can be highly time consuming. In motor control studies, humans or other animals are often marked with reflective markers to assist with computer-based tracking, but markers are intrusive, and the number and location of the markers must be determined a priori. Here we present an efficient method for markerless pose estimation based on transfer learning with deep neural networks that achieves excellent results with minimal training data. We demonstrate the versatility of this framework by tracking various body parts in multiple species across a broad collection of behaviors. Remarkably, even when only a small number of frames are labeled (~200), the algorithm achieves excellent tracking performance on test frames that is comparable to human accuracy.
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            Using DeepLabCut for 3D markerless pose estimation across species and behaviors

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              The ARRIVE guidelines 2.0: Updated guidelines for reporting animal research*

              Reproducible science requires transparent reporting. The ARRIVE guidelines (Animal Research: Reporting of In Vivo Experiments) were originally developed in 2010 to improve the reporting of animal research. They consist of a checklist of information to include in publications describing in vivo experiments to enable others to scrutinise the work adequately, evaluate its methodological rigour, and reproduce the methods and results. Despite considerable levels of endorsement by funders and journals over the years, adherence to the guidelines has been inconsistent, and the anticipated improvements in the quality of reporting in animal research publications have not been achieved. Here, we introduce ARRIVE 2.0. The guidelines have been updated and information reorganised to facilitate their use in practice. We used a Delphi exercise to prioritise and divide the items of the guidelines into 2 sets, the “ARRIVE Essential 10,” which constitutes the minimum requirement, and the “Recommended Set,” which describes the research context. This division facilitates improved reporting of animal research by supporting a stepwise approach to implementation. This helps journal editors and reviewers verify that the most important items are being reported in manuscripts. We have also developed the accompanying Explanation and Elaboration document, which serves (1) to explain the rationale behind each item in the guidelines, (2) to clarify key concepts, and (3) to provide illustrative examples. We aim, through these changes, to help ensure that researchers, reviewers, and journal editors are better equipped to improve the rigour and transparency of the scientific process and thus reproducibility.
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                Author and article information

                Contributors
                Journal
                Heliyon
                Heliyon
                Heliyon
                Elsevier
                2405-8440
                05 February 2024
                15 February 2024
                05 February 2024
                : 10
                : 3
                : e25561
                Affiliations
                [a ]Department of Biomedical Sciences, Wide River Institute of Immunology, Neuroscience Research Institute, Seoul National University College of Medicine, Republic of Korea
                [b ]National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Republic of Korea
                [c ]KRIBB School of Bioscience, Korea National University of Science and Technology, Republic of Korea
                [d ]School of Life Sciences, BK21 Plus KNU Creative BioResearch Group, Kyungpook National University, Republic of Korea
                [e ]Department of Preventive Medicine, Yonsei University College of Medicine, Seoul, Republic of Korea
                [f ]Center for Wireless and Population Health Systems (CWPHS), University of California, San Diego, La Jolla, CA, 92093, USA
                [g ]Herbert Wertheim School of Public Health and Human Longevity Science, University of California San Diego, San Diego, CA, United States
                Author notes
                []Corresponding author. Department of Biomedical Sciences, Neuroscience Research Institute, Seoul National University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, 03080, Republic of Korea. hjchoi@ 123456snu.ac.kr
                [∗∗ ]Corresponding author. National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Cheongju, 28116, Republic of Korea. neurosci@ 123456kribb.re.kr
                [1]

                These authors contributed equally.

                Article
                S2405-8440(24)01592-5 e25561
                10.1016/j.heliyon.2024.e25561
                10865331
                38356587
                69875541-4fc7-4802-8ed3-53d4622c11dc
                © 2024 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 11 July 2023
                : 22 January 2024
                : 29 January 2024
                Categories
                Research Article

                non-human primate,eating behaviors,hunger,palatability,assessment method,deep learning-based analysis

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