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      Aptamers targeting amyloidogenic proteins and their emerging role in neurodegenerative diseases

      review-article
      1 , , 2 , 3 ,
      The Journal of Biological Chemistry
      American Society for Biochemistry and Molecular Biology
      oligonucleotide, RNA, DNA, amyloid, Alzheimer's disease, Parkinson's disease, prion, blood-brain barrier, oligomer, exosome , αSyn, α-synuclein, Aβ, amyloid β-protein, AD, Alzheimer's disease, ADDLs, Aβ-derived diffusible ligands, AI, artificial intelligence, CD, circular dichroism, HT-SELEX, high throughput-systematic evolution of ligands by exponential enrichment, PD, Parkinson's disease, PICUP, photo-induced cross-linking of unmodified protein, RVG, rabies viral glycoprotein, SDS-PAGE, sodium dodecyl sulfate–polyacrylamide gel electrophoresis, SELEX, systematic evolution of ligands by exponential enrichment

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          Abstract

          Aptamers are oligonucleotides selected from large pools of random sequences based on their affinity for bioactive molecules and are used in similar ways to antibodies. Aptamers provide several advantages over antibodies, including their small size, facile, large-scale chemical synthesis, high stability, and low immunogenicity. Amyloidogenic proteins, whose aggregation is relevant to neurodegenerative diseases, such as Alzheimer’s, Parkinson’s, and prion diseases, are among the most challenging targets for aptamer development due to their conformational instability and heterogeneity, the same characteristics that make drug development against amyloidogenic proteins difficult. Recently, chemical tethering of aptagens (equivalent to antigens) and advances in high-throughput sequencing-based analysis have been used to overcome some of these challenges. In addition, internalization technologies using fusion to cellular receptors and extracellular vesicles have facilitated central nervous system (CNS) aptamer delivery. In view of the development of these techniques and resources, here we review antiamyloid aptamers, highlighting preclinical application to CNS therapy.

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          Most cited references162

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          Efficacy and Safety of the mRNA-1273 SARS-CoV-2 Vaccine

          Abstract Background Vaccines are needed to prevent coronavirus disease 2019 (Covid-19) and to protect persons who are at high risk for complications. The mRNA-1273 vaccine is a lipid nanoparticle–encapsulated mRNA-based vaccine that encodes the prefusion stabilized full-length spike protein of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes Covid-19. Methods This phase 3 randomized, observer-blinded, placebo-controlled trial was conducted at 99 centers across the United States. Persons at high risk for SARS-CoV-2 infection or its complications were randomly assigned in a 1:1 ratio to receive two intramuscular injections of mRNA-1273 (100 μg) or placebo 28 days apart. The primary end point was prevention of Covid-19 illness with onset at least 14 days after the second injection in participants who had not previously been infected with SARS-CoV-2. Results The trial enrolled 30,420 volunteers who were randomly assigned in a 1:1 ratio to receive either vaccine or placebo (15,210 participants in each group). More than 96% of participants received both injections, and 2.2% had evidence (serologic, virologic, or both) of SARS-CoV-2 infection at baseline. Symptomatic Covid-19 illness was confirmed in 185 participants in the placebo group (56.5 per 1000 person-years; 95% confidence interval [CI], 48.7 to 65.3) and in 11 participants in the mRNA-1273 group (3.3 per 1000 person-years; 95% CI, 1.7 to 6.0); vaccine efficacy was 94.1% (95% CI, 89.3 to 96.8%; P<0.001). Efficacy was similar across key secondary analyses, including assessment 14 days after the first dose, analyses that included participants who had evidence of SARS-CoV-2 infection at baseline, and analyses in participants 65 years of age or older. Severe Covid-19 occurred in 30 participants, with one fatality; all 30 were in the placebo group. Moderate, transient reactogenicity after vaccination occurred more frequently in the mRNA-1273 group. Serious adverse events were rare, and the incidence was similar in the two groups. Conclusions The mRNA-1273 vaccine showed 94.1% efficacy at preventing Covid-19 illness, including severe disease. Aside from transient local and systemic reactions, no safety concerns were identified. (Funded by the Biomedical Advanced Research and Development Authority and the National Institute of Allergy and Infectious Diseases; COVE ClinicalTrials.gov number, NCT04470427.)
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            Shedding light on the cell biology of extracellular vesicles

            Extracellular vesicles are a heterogeneous group of cell-derived membranous structures comprising exosomes and microvesicles, which originate from the endosomal system or which are shed from the plasma membrane, respectively. They are present in biological fluids and are involved in multiple physiological and pathological processes. Extracellular vesicles are now considered as an additional mechanism for intercellular communication, allowing cells to exchange proteins, lipids and genetic material. Knowledge of the cellular processes that govern extracellular vesicle biology is essential to shed light on the physiological and pathological functions of these vesicles as well as on clinical applications involving their use and/or analysis. However, in this expanding field, much remains unknown regarding the origin, biogenesis, secretion, targeting and fate of these vesicles.
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              Mfold web server for nucleic acid folding and hybridization prediction.

              M Zuker (2003)
              The abbreviated name, 'mfold web server', describes a number of closely related software applications available on the World Wide Web (WWW) for the prediction of the secondary structure of single stranded nucleic acids. The objective of this web server is to provide easy access to RNA and DNA folding and hybridization software to the scientific community at large. By making use of universally available web GUIs (Graphical User Interfaces), the server circumvents the problem of portability of this software. Detailed output, in the form of structure plots with or without reliability information, single strand frequency plots and 'energy dot plots', are available for the folding of single sequences. A variety of 'bulk' servers give less information, but in a shorter time and for up to hundreds of sequences at once. The portal for the mfold web server is http://www.bioinfo.rpi.edu/applications/mfold. This URL will be referred to as 'MFOLDROOT'.
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                Author and article information

                Contributors
                Journal
                J Biol Chem
                J Biol Chem
                The Journal of Biological Chemistry
                American Society for Biochemistry and Molecular Biology
                0021-9258
                1083-351X
                09 December 2021
                January 2022
                09 December 2021
                : 298
                : 1
                : 101478
                Affiliations
                [1 ]Division of Food Science and Biotechnology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
                [2 ]Laboratory of Pharmaceutical Therapy and Neuropharmacology, Faculty of Pharmaceutical Sciences, University of Toyama, Toyama, Japan
                [3 ]Department of Neurology, David Geffen School of Medicine, Brain Research Institute, and Molecular Biology Institute, University of California Los Angeles, Los Angeles, California, USA
                Author notes
                []For correspondence: Kazuma Murakami; Gal Bitan murakami.kazuma.4v@ 123456kyoto-u.ac.jp gbitan@ 123456mednet.ucla.edu
                Article
                S0021-9258(21)01287-4 101478
                10.1016/j.jbc.2021.101478
                8728582
                34896392
                694d5bc8-99e2-4bcf-875d-d2c52f1e0fae
                © 2021 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 28 September 2021
                : 24 November 2021
                Categories
                JBC Reviews

                Biochemistry
                oligonucleotide, rna, dna, amyloid, alzheimer's disease, parkinson's disease, prion, blood-brain barrier, oligomer, exosome,αsyn, α-synuclein,aβ, amyloid β-protein,ad, alzheimer's disease,addls, aβ-derived diffusible ligands,ai, artificial intelligence,cd, circular dichroism,ht-selex, high throughput-systematic evolution of ligands by exponential enrichment,pd, parkinson's disease,picup, photo-induced cross-linking of unmodified protein,rvg, rabies viral glycoprotein,sds-page, sodium dodecyl sulfate–polyacrylamide gel electrophoresis,selex, systematic evolution of ligands by exponential enrichment

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