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      Mice with endogenous TDP‐43 mutations exhibit gain of splicing function and characteristics of amyotrophic lateral sclerosis

      research-article
      1 , , 1 , 1 , 2 , 2 , 3 , 3 , 4 , 1 , 1 , 5 , 1 , 1 , 1 , 6 , 1 , 4 , 7 , 7 , 3 , 2 , 7 , 1 , 8 , 8 , 5 , 9 , 9 , 9 , 7 , 10 , 11 , 11 , 1 , 12 , 13 , 14 , 14 , 15 , 1 , 15 , 2 , 1 , 3 , 4 ,
      The EMBO Journal
      John Wiley and Sons Inc.
      ALS, cryptic exon, skiptic exon, splicing, TDP‐43, Molecular Biology of Disease, Neuroscience, RNA Biology

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          Abstract

          TDP‐43 (encoded by the gene TARDBP ) is an RNA binding protein central to the pathogenesis of amyotrophic lateral sclerosis ( ALS). However, how TARDBP mutations trigger pathogenesis remains unknown. Here, we use novel mouse mutants carrying point mutations in endogenous Tardbp to dissect TDP‐43 function at physiological levels both in vitro and in vivo. Interestingly, we find that mutations within the C‐terminal domain of TDP‐43 lead to a gain of splicing function. Using two different strains, we are able to separate TDP‐43 loss‐ and gain‐of‐function effects. TDP‐43 gain‐of‐function effects in these mice reveal a novel category of splicing events controlled by TDP‐43, referred to as “skiptic” exons, in which skipping of constitutive exons causes changes in gene expression. In vivo, this gain‐of‐function mutation in endogenous Tardbp causes an adult‐onset neuromuscular phenotype accompanied by motor neuron loss and neurodegenerative changes. Furthermore, we have validated the splicing gain‐of‐function and skiptic exons in ALS patient‐derived cells. Our findings provide a novel pathogenic mechanism and highlight how TDP‐43 gain of function and loss of function affect RNA processing differently, suggesting they may act at different disease stages.

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          Most cited references22

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          Motor neuron degeneration in mice that express a human Cu,Zn superoxide dismutase mutation.

          Mutations of human Cu,Zn superoxide dismutase (SOD) are found in about 20 percent of patients with familial amyotrophic lateral sclerosis (ALS). Expression of high levels of human SOD containing a substitution of glycine to alanine at position 93--a change that has little effect on enzyme activity--caused motor neuron disease in transgenic mice. The mice became paralyzed in one or more limbs as a result of motor neuron loss from the spinal cord and died by 5 to 6 months of age. The results show that dominant, gain-of-function mutations in SOD contribute to the pathogenesis of familial ALS.
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            Transcriptome-wide regulation of pre-mRNA splicing and mRNA localization by muscleblind proteins.

            The muscleblind-like (Mbnl) family of RNA-binding proteins plays important roles in muscle and eye development and in myotonic dystrophy (DM), in which expanded CUG or CCUG repeats functionally deplete Mbnl proteins. We identified transcriptome-wide functional and biophysical targets of Mbnl proteins in brain, heart, muscle, and myoblasts by using RNA-seq and CLIP-seq approaches. This analysis identified several hundred splicing events whose regulation depended on Mbnl function in a pattern indicating functional interchangeability between Mbnl1 and Mbnl2. A nucleotide resolution RNA map associated repression or activation of exon splicing with Mbnl binding near either 3' splice site or near the downstream 5' splice site, respectively. Transcriptomic analysis of subcellular compartments uncovered a global role for Mbnls in regulating localization of mRNAs in both mouse and Drosophila cells, and Mbnl-dependent translation and protein secretion were observed for a subset of mRNAs with Mbnl-dependent localization. These findings hold several new implications for DM pathogenesis. Copyright © 2012 Elsevier Inc. All rights reserved.
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              Loss of murine TDP-43 disrupts motor function and plays an essential role in embryogenesis.

              Abnormal TDP-43 aggregation is a prominent feature in the neuropathology of amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration. Mutations in TARDBP, the gene encoding TDP-43, cause some cases of ALS. The normal function of TDP-43 remains incompletely understood. To better understand TDP-43 biology, we generated mutant mice carrying a genetrap disruption of Tardbp. Mice homozygous for loss of TDP-43 are not viable. TDP-43 deficient embryos die about day 7.5 of embryonic development thereby demonstrating that TDP-43 protein is essential for normal prenatal development and survival. However, heterozygous Tardbp mutant mice exhibit signs of motor disturbance and muscle weakness. Compared with wild type control littermates, Tardbp (+/-) animals have significantly decreased forelimb grip strength and display deficits in a standard inverted grid test despite no evidence of pathologic changes in motor neurons. Thus, TDP-43 is essential for viability, and mild reduction in TDP-43 function is sufficient to cause motor deficits without degeneration of motor neurons.
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                Author and article information

                Contributors
                p.fratta@ucl.ac.uk
                aacevedo@ull.edu.es
                Journal
                EMBO J
                EMBO J
                10.1002/(ISSN)1460-2075
                EMBJ
                embojnl
                The EMBO Journal
                John Wiley and Sons Inc. (Hoboken )
                0261-4189
                1460-2075
                15 May 2018
                01 June 2018
                15 May 2018
                : 37
                : 11 ( doiID: 10.1002/embj.v37.11 )
                : e98684
                Affiliations
                [ 1 ] UCL Institute of Neurology, and MRC Centre for Neuromuscular Disease London UK
                [ 2 ] UCL Genetics Institute London UK
                [ 3 ] MRC Mammalian Genetics Unit Harwell UK
                [ 4 ] Unidad de Investigación Hospital Universitario de Canarias Fundación Canaria de Investigación Sanitaria and Instituto de Tecnologías Biomédicas (CIBICAN) La Laguna Spain
                [ 5 ] UCL Centre for Advanced Biomedical Imaging University College London London UK
                [ 6 ] Graduate Program in Molecular Biology, Cell Biology and Biochemistry Brown University Providence RI USA
                [ 7 ] MRC Mary Lyon Centre Harwell UK
                [ 8 ] Mutagenesis and Genomics Team RIKEN BioResource Center Tsukuba Ibaraki Japan
                [ 9 ] UCL Institute of Child Health London UK
                [ 10 ] UCL Institute of Neurology and Francis Crick Institute London UK
                [ 11 ] Rita Levi Montalcini Department of Neuroscience University of Turin Turin Italy
                [ 12 ] UK Dementia Research Institute at UCL UCL Institute of Neurology London UK
                [ 13 ] Department of Molecular Pharmacology, Physiology & Biotechnology Brown University Providence RI USA
                [ 14 ] Department of Biology Massachusetts Institute of Technology Cambridge MA USA
                [ 15 ] International Center for Genomic Engineering and Biotechnology (ICGEB) Trieste Italy
                Author notes
                [*] [* ] Corresponding author. Tel: +44 2034 484112; E‐mail: p.fratta@ 123456ucl.ac.uk

                Corresponding author. Tel: +34 9226 78108; E‐mail: aacevedo@ 123456ull.edu.es

                [†]

                These authors contributed equally to this work

                [‡]

                These authors contributed equally to this work

                Author information
                http://orcid.org/0000-0002-8762-8188
                http://orcid.org/0000-0003-0893-9947
                http://orcid.org/0000-0001-9340-8117
                http://orcid.org/0000-0002-6820-5534
                http://orcid.org/0000-0001-5483-0577
                http://orcid.org/0000-0002-1356-9074
                http://orcid.org/0000-0001-6127-7116
                Article
                EMBJ201798684
                10.15252/embj.201798684
                5983119
                29764981
                691e5aea-c35b-4d82-a04c-34eaaa855ac8
                © 2018 The Authors. Published under the terms of the CC BY 4.0 license

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 20 November 2017
                : 15 March 2018
                : 22 March 2018
                Page count
                Figures: 11, Tables: 0, Pages: 15, Words: 11766
                Funding
                Funded by: MRC/MNDA LEW Fellowship
                Funded by: NIHR‐UCLH Biomedical Research Centre
                Funded by: Thierry Latran Foundation
                Funded by: UK Motor Neuron Disease Association
                Funded by: National Institute of General Medical Sciences (NIGMS) of the National Institutes of Health (NIH)
                Award ID: R01GM118530
                Funded by: ALS Association
                Award ID: 17‐IIP‐342
                Funded by: ALS Research Grant from the Judith & Jean Pape Adams Charitable Foundation
                Funded by: Molecular Biology, Cell Biology and Biochemistry (MCB) at Brown University
                Award ID: T32 GM07601
                Funded by: BIBS Graduate Award in Brain Science from the Brown Institute for Brain Science Reisman Fund
                Funded by: KAKENHI
                Award ID: 21240043
                Award ID: 17H00789
                Funded by: NIHR BRC GOSH
                Funded by: Great Ormond Street Children's Charity
                Funded by: RCUK | Medical Research Council (MRC)
                Award ID: MC_UP_A390_1106
                Funded by: MINECO | Instituto de Salud Carlos III (ISCIII)
                Award ID: CP15/00153
                Funded by: Rosetrees Trust
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                Custom metadata
                2.0
                embj201798684
                01 June 2018
                Converter:WILEY_ML3GV2_TO_NLMPMC version:version=5.4.0 mode:remove_FC converted:01.06.2018

                Molecular biology
                als,cryptic exon,skiptic exon,splicing,tdp‐43,molecular biology of disease,neuroscience,rna biology

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