33
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Histone supply: Multitiered regulation ensures chromatin dynamics throughout the cell cycle

      review-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Mendiratta et al. review the interplay between the different regulatory layers that affect the transcription and dynamics of distinct histone H3 variants along the cell cycle.

          Abstract

          As the building blocks of chromatin, histones are central to establish and maintain particular chromatin states associated with given cell fates. Importantly, histones exist as distinct variants whose expression and incorporation into chromatin are tightly regulated during the cell cycle. During S phase, specialized replicative histone variants ensure the bulk of the chromatinization of the duplicating genome. Other non-replicative histone variants deposited throughout the cell cycle at specific loci use pathways uncoupled from DNA synthesis. Here, we review the particular dynamics of expression, cellular transit, assembly, and disassembly of replicative and non-replicative forms of the histone H3. Beyond the role of histone variants in chromatin dynamics, we review our current knowledge concerning their distinct regulation to control their expression at different levels including transcription, posttranscriptional processing, and protein stability. In light of this unique regulation, we highlight situations where perturbations in histone balance may lead to cellular dysfunction and pathologies.

          Related collections

          Most cited references180

          • Record: found
          • Abstract: found
          • Article: not found

          Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.

          Mammalian pre-implantation development is a complex process involving dramatic changes in the transcriptional architecture. We report here a comprehensive analysis of transcriptome dynamics from oocyte to morula in both human and mouse embryos, using single-cell RNA sequencing. Based on single-nucleotide variants in human blastomere messenger RNAs and paternal-specific single-nucleotide polymorphisms, we identify novel stage-specific monoallelic expression patterns for a significant portion of polymorphic gene transcripts (25 to 53%). By weighted gene co-expression network analysis, we find that each developmental stage can be delineated concisely by a small number of functional modules of co-expressed genes. This result indicates a sequential order of transcriptional changes in pathways of cell cycle, gene regulation, translation and metabolism, acting in a step-wise fashion from cleavage to morula. Cross-species comparisons with mouse pre-implantation embryos reveal that the majority of human stage-specific modules (7 out of 9) are notably preserved, but developmental specificity and timing differ between human and mouse. Furthermore, we identify conserved key members (or hub genes) of the human and mouse networks. These genes represent novel candidates that are likely to be key in driving mammalian pre-implantation development. Together, the results provide a valuable resource to dissect gene regulatory mechanisms underlying progressive development of early mammalian embryos.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            AP-1 function and regulation.

            AP-1 (activating protein-1) is a collective term referring to dimeric transcription factors composed of Jun, Fos or ATF (activating transcription factor) subunits that bind to a common DNA site, the AP-1-binding site. As the complexity of our knowledge of AP-1 factors has increased, our understanding of their physiological function has decreased. This trend, however, is beginning to be reversed due to the recent studies of gene-knockout mice and cell lines deficient in specific AP-1 components. Such studies suggest that different AP-1 factors may regulate different target genes and thus execute distinct biological functions. Also, the involvement of AP-1 factors in functions such as cell proliferation and survival has been made somewhat clearer as a result of such studies. In addition, there has been considerable progress in understanding some of the mechanisms and signaling pathways involved in the regulation of AP-1 activity. In addition to regulation by heterodimerization between Jun, Fos and ATF proteins, AP-1 activity is regulated through interactions with specific protein kinases and a variety of transcriptional coactivators.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail.

              The canonical histone proteins are encoded by replication-dependent genes and must rapidly reach high levels of expression during S phase. In metazoans the genes that encode these proteins produce mRNAs that, instead of being polyadenylated, contain a unique 3' end structure. By contrast, the synthesis of the variant, replication-independent histones, which are encoded by polyadenylated mRNAs, persists outside of S phase. Accurate positioning of both histone types in chromatin is essential for proper transcriptional regulation, the demarcation of heterochromatic boundaries and the epigenetic inheritance of gene expression patterns. Recent results suggest that the coordinated synthesis of replication-dependent and variant histone mRNAs is achieved by signals that affect formation of the 3' end of the replication-dependent histone mRNAs.
                Bookmark

                Author and article information

                Journal
                J Cell Biol
                J. Cell Biol
                jcb
                jcb
                The Journal of Cell Biology
                Rockefeller University Press
                0021-9525
                1540-8140
                07 January 2019
                : 218
                : 1
                : 39-54
                Affiliations
                [1 ]Institut Curie, Paris Sciences et Lettres Research University, Centre National de la Recherche Scientifique, UMR3664, Equipe Labellisée Ligue contre le Cancer, Paris, France
                [2 ]Sorbonne Universités, Université Pierre et Marie Curie Paris 06, Centre National de la Recherche Scientifique, UMR3664, Paris, France
                Author notes
                Correspondence to Genevieve Almouzni: genevieve.almouzni@ 123456curie.fr
                [*]

                S. Mendiratta and A. Gatto contributed equally to this paper.

                Author information
                http://orcid.org/0000-0002-8256-1156
                http://orcid.org/0000-0002-8378-0131
                http://orcid.org/0000-0001-5570-0723
                Article
                201807179
                10.1083/jcb.201807179
                6314538
                30257851
                682c4d2c-33d4-4941-9839-684f19ec5a70
                © 2018 Mendiratta et al.

                This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms/). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 4.0 International license, as described at https://creativecommons.org/licenses/by-nc-sa/4.0/).

                History
                : 24 July 2018
                : 05 September 2018
                : 12 September 2018
                Funding
                Funded by: Ligue Contre le Cancer, DOI https://doi.org/10.13039/501100004099;
                Award ID: Equipe Labelisée 2016
                Funded by: H2020 European Research Council, DOI https://doi.org/10.13039/100010663;
                Award ID: ERC-2015-ADG-694694 “ChromADICT”
                Award ID: ERC-2015-POC project 678563 “EPOCH28
                Funded by: Parisian Alliance of Cancer Research Institutes
                Funded by: Horizon 2020 Framework Programme, DOI https://doi.org/10.13039/100010661;
                Funded by: H2020 Marie Skłodowska-Curie Actions, DOI https://doi.org/10.13039/100010665;
                Award ID: 798106 “REPLICHROM4D”
                Funded by: Agence Nationale de la Recherche, DOI https://doi.org/10.13039/501100001665;
                Award ID: 11-LABX-0044 “DEEP,” 10-IDEX-0001-02 “PSL"
                Award ID: ANR-12-BSV5-0022-02 “CHAPINHIB,” ANR-14-CE16-0009 “Epicure"
                Award ID: ANR-14-CE10-0013 “CELLECTCHIP"
                Award ID: ANR-16-CE15-0018 “CHRODYT"
                Award ID: ANR-16-CE12-0024 “CHIFT"
                Award ID: ANR-16-CE11-0028 “REPLICAF”
                Categories
                Reviews
                Review

                Cell biology
                Cell biology

                Comments

                Comment on this article

                scite_
                0
                0
                0
                0
                Smart Citations
                0
                0
                0
                0
                Citing PublicationsSupportingMentioningContrasting
                View Citations

                See how this article has been cited at scite.ai

                scite shows how a scientific paper has been cited by providing the context of the citation, a classification describing whether it supports, mentions, or contrasts the cited claim, and a label indicating in which section the citation was made.

                Cited by46

                Most referenced authors2,537