Pb(II) is a significant contaminant that is known to have negative effects on both humans and animals. Recent industrial operations have exacerbated these consequences, and their release of several contaminants, including lead ions, has drawn attention to the potential effects on human health. Therefore, there is a lot of interest in the rapid, accurate, and selective detection of lead ions in various environmental samples. Sensors-based nanomaterials are a significant class among the many tools and methods developed and applied for such purposes. Therefore, a novel green synthesized cobalt ferrite (CoFe2O4) nanoparticles and functionalized CoFe2O4/Ca-alginate nanocomposite was designed and successfully synthesized for the fabrication of nanoparticles and nanocomposite-coated quartz crystal microbalance (QCM) nanosensors to detect the low concentrations of Pb(II) ions in the aqueous solutions at different temperatures. The structural and morphological properties of synthesized nanoparticles and nanocomposite were characterized using different tools such as X-ray diffraction (XRD), N2 adsorption-desorption isotherm, dynamic light scattering (DLS), zeta potential analyzer (ζ-potential), atomic force microscopy (AFM), scanning electron microscopy (SEM), transmission electron microscopy (TEM), and energy-dispersive X-ray spectroscopy (EDX). The QCM results revealed that the green synthesized CoFe2O4 nanoparticles and functionalized CoFe2O4/Ca-alginate nanocomposite-coated QCM nanosensors exhibited high sensitivity, stability, and rapid detection of Pb(II) ions in the aqueous solutions at different temperature. The lowest detection limit for Pb(II) ions in the aqueous solutions could reach 125 ng, which resulted in a frequency shift of 27.49 ± 0.81, 23.63 ± 0.90, and 19.57 ± 0.86 Hz (Δf) for the QCM detector coated with green synthesized CoFe2O4 nanoparticles thin films, and 25.85 ± 0.85, 33.87 ± 0.73, and 6.87 ± 0.08 Hz (Δf) for the QCM detector coated with CoFe2O4/Ca-Alg nanocomposite thin films in a real-time of about 11, 13, and 13 min at 25 °C, 35 °C, and 45 °C, respectively. In addition, the resonance frequency change results showed the superiority of functionalized CoFe2O4/Ca-alginate nanocomposite coated QCM nanosensor over CoFe2O4 nanoparticles towards Pb(II) ions detecting, which attributed to the beneficial properties of alginate biopolymer.