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      Maternal Methamphetamine Exposure Influences Behavioral Sensitization and Nucleus Accumbens DNA Methylation in Subsequent Generation

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          Abstract

          The deleterious effects of methamphetamine (METH) exposure extend beyond abusers, and may potentially impact the vulnerability of their offspring in developing addictive behaviors. Epigenetic signatures have been implicated in addiction, yet the characteristics to identify prenatal METH abuse to offspring addiction risk remains elusive. Here, we used escalating doses of METH-exposed mouse model in F0 female mice before and during pregnancy to simulate the human pattern of drug abuse and generated METH-induced behavioral sensitization to investigate the addictive behavior in offspring mice. We then utilized whole genome-bisulfite sequencing (WGBS) to investigate the methylation signature of nucleus accumbens (NAc) in male METH-sensitized mice. Interestingly, male but not female offspring exhibited an enhanced response to METH-induced behavioral sensitization. Additionally, the METH-exposed group of male mice underwent a more comprehensive wave of epigenome remodeling over all genomic elements compared with unexposed groups due to drug exposure history. 104,219 DMCs (METH-SAL vs . SAL-SAL) induced by prenatal METH-exposure were positively correlated with that of postnatal METH-exposure (38,570, SAL-METH vs . SAL-SAL). Moreover, 4,983 DMCs induced by pre- and postnatal METH exposure (METH-METH vs . SAL-METH) were negatively correlated with that of postnatal METH exposure, and 371 commonly changed DMCs between the two comparison groups also showed a significantly negative correlation and 86 annotated genes functionally enriched in the pathways of neurodevelopment and addiction. Key annotated genes included Kirrel3, Lrpprc, and Peg3, implicated in neurodevelopmental processes, were down-regulated in METH-METH group mice compared with the SAL-METH group. Taken together, we render novel insights into the epigenetic correlation of drug exposure and provide evidence for epigenetic characteristics that link maternal METH exposure to the intensity of the same drug-induced behavioral sensitization in adult offspring.

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          Most cited references58

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          KEGG: new perspectives on genomes, pathways, diseases and drugs

          KEGG (http://www.kegg.jp/ or http://www.genome.jp/kegg/) is an encyclopedia of genes and genomes. Assigning functional meanings to genes and genomes both at the molecular and higher levels is the primary objective of the KEGG database project. Molecular-level functions are stored in the KO (KEGG Orthology) database, where each KO is defined as a functional ortholog of genes and proteins. Higher-level functions are represented by networks of molecular interactions, reactions and relations in the forms of KEGG pathway maps, BRITE hierarchies and KEGG modules. In the past the KO database was developed for the purpose of defining nodes of molecular networks, but now the content has been expanded and the quality improved irrespective of whether or not the KOs appear in the three molecular network databases. The newly introduced addendum category of the GENES database is a collection of individual proteins whose functions are experimentally characterized and from which an increasing number of KOs are defined. Furthermore, the DISEASE and DRUG databases have been improved by systematic analysis of drug labels for better integration of diseases and drugs with the KEGG molecular networks. KEGG is moving towards becoming a comprehensive knowledge base for both functional interpretation and practical application of genomic information.
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            Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

            Summary: A combination of bisulfite treatment of DNA and high-throughput sequencing (BS-Seq) can capture a snapshot of a cell's epigenomic state by revealing its genome-wide cytosine methylation at single base resolution. Bismark is a flexible tool for the time-efficient analysis of BS-Seq data which performs both read mapping and methylation calling in a single convenient step. Its output discriminates between cytosines in CpG, CHG and CHH context and enables bench scientists to visualize and interpret their methylation data soon after the sequencing run is completed. Availability and implementation: Bismark is released under the GNU GPLv3+ licence. The source code is freely available from www.bioinformatics.bbsrc.ac.uk/projects/bismark/. Contact: felix.krueger@bbsrc.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.
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              methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

              DNA methylation is a chemical modification of cytosine bases that is pivotal for gene regulation, cellular specification and cancer development. Here, we describe an R package, methylKit, that rapidly analyzes genome-wide cytosine epigenetic profiles from high-throughput methylation and hydroxymethylation sequencing experiments. methylKit includes functions for clustering, sample quality visualization, differential methylation analysis and annotation features, thus automating and simplifying many of the steps for discerning statistically significant bases or regions of DNA methylation. Finally, we demonstrate methylKit on breast cancer data, in which we find statistically significant regions of differential methylation and stratify tumor subtypes. methylKit is available at http://code.google.com/p/methylkit.
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                Author and article information

                Contributors
                Journal
                Front Pharmacol
                Front Pharmacol
                Front. Pharmacol.
                Frontiers in Pharmacology
                Frontiers Media S.A.
                1663-9812
                19 July 2022
                2022
                : 13
                : 940798
                Affiliations
                [1] 1 College of Forensic Medicine , Xi’an Jiaotong University Health Science Center , Xi’an, China
                [2] 2 The Key Laboratory of Health Ministry for Forensic Science , Xi’an Jiaotong University , Xi’an, China
                [3] 3 Neuroscience Research Center , Institute of Mitochondrial Biology and Medicine , Key Laboratory of Biomedical Information Engineering of the Ministry of Education , School of Life Science and Technology , Xi’an Jiaotong University , Xi’an, China
                [4] 4 Department of Immunology and Pathogenic Biology , College of Basic Medicine , Xi’an Jiaotong University Health Science Center , Xi’an, China
                [5] 5 Neuroscience and Mental Health Faculty , Lee Kong Chian School of Medicine , Nanyang Technological University , Singapore, Singapore
                [6] 6 Singhealth Duke-NUS Neuroscience Academic Clinical Programme , Singapore, Singapore
                Author notes

                Edited by: Steven R. Laviolette, Western University (Canada), Canada

                Reviewed by: Walter Adriani, National Institute of Health (ISS), Italy

                Adele Stewart, Florida Atlantic University, United States

                *Correspondence: Teng Chen, chenteng@ 123456xjtu.edu.cn

                This article was submitted to Neuropharmacology, a section of the journal Frontiers in Pharmacology

                Article
                940798
                10.3389/fphar.2022.940798
                9343784
                35928279
                63d4f213-e8f1-4ae0-8352-5ff5eeacfd85
                Copyright © 2022 Dong, Zhu, Wang, Wang, Chen, Wang, Goh and Chen.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 10 May 2022
                : 13 June 2022
                Funding
                Funded by: National Natural Science Foundation of China , doi 10.13039/501100001809;
                Funded by: Ministry of Education—Singapore , doi 10.13039/501100001459;
                Categories
                Pharmacology
                Original Research

                Pharmacology & Pharmaceutical medicine
                methamphetamine,maternal exposure,behavioral sensitization,dna methylation,nucleus accumbens

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