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      Small but Manifold – Hidden Diversity in “ Spumella‐like Flagellates”

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          Abstract

          Colourless, nonscaled chrysophytes comprise morphologically similar or even indistinguishable flagellates which are important bacterivors in water and soil crucial for ecosystem functioning. However, phylogenetic analyses indicate a multiple origin of such colourless, nonscaled flagellate lineages. These flagellates are often referred to as “ Spumella‐like flagellates” in ecological and biogeographic studies. Although this denomination reflects an assumed polyphyly, it obscures the phylogenetic and taxonomic diversity of this important flagellate group and, thus, hinders progress in lineage‐ and taxon‐specific ecological surveys. The smallest representatives of colourless chrysophytes have been addressed in very few taxonomic studies although they are among the dominant flagellates in field communities. To overcome the blurred picture and set the field for further investigation in biogeography and ecology of the organisms in question, we studied a set of strains of specifically small, colourless, nonscaled chrysomonad flagellates by means of electron microscopy and molecular analyses. They were isolated by a filtration‐acclimatisation approach focusing on flagellates of around 5 μm. We present the phylogenetic position of eight different lineages on both the ordinal and the generic level. Accordingly, we describe the new genera Apoikiospumella, Chromulinospumella, Segregatospumella, Cornospumella and Acrispumella Boenigk et Grossmann n. g. and different species within them.

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          A low-viscosity epoxy resin embedding medium for electron microscopy.

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            TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

            Background Most analysis programs for inferring molecular phylogenies are difficult to use, in particular for researchers with little programming experience. Results TREEFINDER is an easy-to-use integrative platform-independent analysis environment for molecular phylogenetics. In this paper the main features of TREEFINDER (version of April 2004) are described. TREEFINDER is written in ANSI C and Java and implements powerful statistical approaches for inferring gene tree and related analyzes. In addition, it provides a user-friendly graphical interface and a phylogenetic programming language. Conclusions TREEFINDER is a versatile framework for analyzing phylogenetic data across different platforms that is suited both for exploratory as well as advanced studies.
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              A SIMPLIFIED LEAD CITRATE STAIN FOR USE IN ELECTRON MICROSCOPY

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                Author and article information

                Journal
                J Eukaryot Microbiol
                J. Eukaryot. Microbiol
                10.1111/(ISSN)1550-7408
                JEU
                The Journal of Eukaryotic Microbiology
                John Wiley and Sons Inc. (Hoboken )
                1066-5234
                1550-7408
                13 January 2016
                Jul-Aug 2016
                : 63
                : 4 ( doiID: 10.1111/jeu.2016.63.issue-4 )
                : 419-439
                Affiliations
                [ 1 ] Department of BiodiversityUniversity of Duisburg‐Essen Universitätsstrasse 5 45141 EssenGermany
                [ 2 ] Department of ZoologyUniversity of Stuttgart Pfaffenwaldring 57 70550 StuttgartGermany
                Author notes
                [*] [* ] Correspondence

                L. Grossmann, Department of Biodiversity, University of Duisburg‐Essen, Universitätsstrasse 5, 45141 Essen, Germany

                Telephone number: +49‐(0)201‐183‐3200; FAX number: +49‐(0)201‐183‐4290; e‐mail: lars.grossmann@ 123456uni-due.de

                Article
                JEU12287
                10.1111/jeu.12287
                5066751
                26662881
                63ac1207-cdd8-4662-b5fb-afef23befaeb
                © 2015 The Author(s). The Journal of Eukaryotic Microbiology published by Wiley Periodicals, Inc. on behalf of International Society of Protistologists.

                This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 07 March 2014
                : 16 October 2015
                : 09 November 2015
                Page count
                Pages: 21
                Funding
                Funded by: DFG
                Award ID: BO 3245/3‐1
                Award ID: BO 3245/2‐1
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                jeu12287
                July/August 2016
                Converter:WILEY_ML3GV2_TO_NLMPMC version:4.9.5 mode:remove_FC converted:17.10.2016

                Microbiology & Virology
                bacterivorous protists,biodiversity,chrysomonads,chrysophyceae,heterotrophic nanoflagellates,microbial food web,microbial loop,monas,stramenopiles,taxonomy

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