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      Machine learning, statistical learning and the future of biological research in psychiatry

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          Abstract

          Psychiatric research has entered the age of ‘Big Data’. Datasets now routinely involve thousands of heterogeneous variables, including clinical, neuroimaging, genomic, proteomic, transcriptomic and other ‘omic’ measures. The analysis of these datasets is challenging, especially when the number of measurements exceeds the number of individuals, and may be further complicated by missing data for some subjects and variables that are highly correlated. Statistical learning-based models are a natural extension of classical statistical approaches but provide more effective methods to analyse very large datasets. In addition, the predictive capability of such models promises to be useful in developing decision support systems. That is, methods that can be introduced to clinical settings and guide, for example, diagnosis classification or personalized treatment. In this review, we aim to outline the potential benefits of statistical learning methods in clinical research. We first introduce the concept of Big Data in different environments. We then describe how modern statistical learning models can be used in practice on Big Datasets to extract relevant information. Finally, we discuss the strengths of using statistical learning in psychiatric studies, from both research and practical clinical points of view.

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          Scientific method: statistical errors.

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            A framework for feature selection in clustering.

            We consider the problem of clustering observations using a potentially large set of features. One might expect that the true underlying clusters present in the data differ only with respect to a small fraction of the features, and will be missed if one clusters the observations using the full set of features. We propose a novel framework for sparse clustering, in which one clusters the observations using an adaptively chosen subset of the features. The method uses a lasso-type penalty to select the features. We use this framework to develop simple methods for sparse K-means and sparse hierarchical clustering. A single criterion governs both the selection of the features and the resulting clusters. These approaches are demonstrated on simulated data and on genomic data sets.
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              Genetic interactions in cancer progression and treatment.

              As cancer cell genomes are unveiled at a breathtaking pace, the genetic principles at play in cancer are emerging in all their complexity, prompting the assessment of classical genetic interaction models. Here, we discuss the implications of these findings for cancer progression and heterogeneity and for the development of new therapeutic approaches. Copyright © 2011 Elsevier Inc. All rights reserved.
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                Author and article information

                Journal
                Psychol Med
                Psychol Med
                PSM
                Psychological Medicine
                Cambridge University Press (Cambridge, UK )
                0033-2917
                1469-8978
                September 2016
                13 July 2016
                : 46
                : 12
                : 2455-2465
                Affiliations
                [1 ]Social, Genetic and Developmental Psychiatry Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London , UK
                [2 ]Department of Biostatistics, Institute of Psychiatry, Psychology and Neuroscience, King's College London , UK
                Author notes
                [* ]Address for correspondence: Dr R. Iniesta, Social, Genetic and Developmental Psychiatry Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London , UK. (Email: raquel.iniesta@ 123456kcl.ac.uk )
                Article
                S0033291716001367 00136
                10.1017/S0033291716001367
                4988262
                27406289
                61843ea0-e579-4b80-9174-69347d8845cc
                © Cambridge University Press 2016

                This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 21 January 2015
                : 04 May 2016
                : 12 May 2016
                Page count
                Figures: 3, Tables: 2, References: 65, Pages: 11
                Categories
                Review Article

                Clinical Psychology & Psychiatry
                machine learning,outcome prediction,personalized medicine,predictive modelling,statistical learning

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