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      VEGFR1 promotes cell migration and proliferation through PLCγ and PI3K pathways

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      , ,
      NPJ Systems Biology and Applications
      Nature Publishing Group UK

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          Abstract

          The ability to control vascular endothelial growth factor (VEGF) signaling offers promising therapeutic potential for vascular diseases and cancer. Despite this promise, VEGF-targeted therapies are not clinically effective for many pathologies, such as breast cancer. VEGFR1 has recently emerged as a predictive biomarker for anti-VEGF efficacy, implying a functional VEGFR1 role beyond its classically defined decoy receptor status. Here we introduce a computational approach that accurately predicts cellular responses elicited via VEGFR1 signaling. Aligned with our model prediction, we show empirically that VEGFR1 promotes macrophage migration through PLC γ and PI3K pathways and promotes macrophage proliferation through a PLC γ pathway. These results provide new insight into the basic function of VEGFR1 signaling while offering a computational platform to quantify signaling of any receptor.

          Thought experiment: discovered the protein functions with mathematics

          Many diseases and cancers have the potential to be prevented or cured with treatments that manage the function of specific biological proteins. Developing successful treatments are made difficult due to a lack of understanding of the function of these biological proteins, especially since they can have different functions depending on the type of cell they are functioning in. In this study,  Prof. Imoukhuede and his team from University of Illinois at Urbana-Champaign develop a mathematical approach to understand the overall function of such biological proteins. They apply this approach to a specific biological protein, which is poorly understood, to identify its basic function and discuss why its function may be different in different cells. Overall, this work provides an approach to direct disease treatment development by providing a better understanding of proteins driving the disease.

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          Most cited references76

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          The protein kinase complement of the human genome.

          G. Manning (2002)
          We have catalogued the protein kinase complement of the human genome (the "kinome") using public and proprietary genomic, complementary DNA, and expressed sequence tag (EST) sequences. This provides a starting point for comprehensive analysis of protein phosphorylation in normal and disease states, as well as a detailed view of the current state of human genome analysis through a focus on one large gene family. We identify 518 putative protein kinase genes, of which 71 have not previously been reported or described as kinases, and we extend or correct the protein sequences of 56 more kinases. New genes include members of well-studied families as well as previously unidentified families, some of which are conserved in model organisms. Classification and comparison with model organism kinomes identified orthologous groups and highlighted expansions specific to human and other lineages. We also identified 106 protein kinase pseudogenes. Chromosomal mapping revealed several small clusters of kinase genes and revealed that 244 kinases map to disease loci or cancer amplicons.
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            Endothelial cells dynamically compete for the tip cell position during angiogenic sprouting.

            Sprouting angiogenesis requires the coordinated behaviour of endothelial cells, regulated by Notch and vascular endothelial growth factor receptor (VEGFR) signalling. Here, we use computational modelling and genetic mosaic sprouting assays in vitro and in vivo to investigate the regulation and dynamics of endothelial cells during tip cell selection. We find that endothelial cells compete for the tip cell position through relative levels of Vegfr1 and Vegfr2, demonstrating a biological role for differential Vegfr regulation in individual endothelial cells. Differential Vegfr levels affect tip selection only in the presence of a functional Notch system by modulating the expression of the ligand Dll4. Time-lapse microscopy imaging of mosaic sprouts identifies dynamic position shuffling of tip and stalk cells in vitro and in vivo, indicating that the VEGFR-Dll4-Notch signalling circuit is constantly re-evaluated as cells meet new neighbours. The regular exchange of the leading tip cell raises novel implications for the concept of guided angiogenic sprouting.
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              PI3K signalling: the path to discovery and understanding.

              Over the past two decades, our understanding of phospoinositide 3-kinases (PI3Ks) has progressed from the identification of an enzymatic activity associated with growth factors, GPCRs and certain oncogene products to a disease target in cancer and inflammation, with PI3K inhibitors currently in clinical trials. Elucidation of PI3K-dependent networks led to the discovery of the phosphoinositide-binding PH, PX and FYVE domains as conduits of intracellular lipid signalling, the determination of the molecular function of the tumour suppressor PTEN and the identification of AKT and mTOR protein kinases as key regulators of cell growth. Here we look back at the main discoveries that shaped the PI3K field.
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                Author and article information

                Contributors
                pii@illinois.edu
                Journal
                NPJ Syst Biol Appl
                NPJ Syst Biol Appl
                NPJ Systems Biology and Applications
                Nature Publishing Group UK (London )
                2056-7189
                19 December 2017
                19 December 2017
                2018
                : 4
                : 1
                Affiliations
                ISNI 0000 0004 1936 9991, GRID grid.35403.31, Department of Bioengineering, , University of Illinois at Urbana-Champaign, ; Urbana, IL 61801 USA
                Author information
                http://orcid.org/0000-0002-4257-1085
                Article
                37
                10.1038/s41540-017-0037-9
                5736688
                29263797
                6147fe2d-b359-4a31-9b5c-2adddd4f0a48
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 6 December 2016
                : 8 November 2017
                : 21 November 2017
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                © The Author(s) 2018

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