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      A donor splice site mutation in CISD2 generates multiple truncated, non-functional isoforms in Wolfram syndrome type 2 patients

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          Abstract

          Background

          Mutations in the gene that encodes CDGSH iron sulfur domain 2 ( CISD2) are causative of Wolfram syndrome type 2 (WFS2), a rare autosomal recessive neurodegenerative disorder mainly characterized by diabetes mellitus, optic atrophy, peptic ulcer bleeding and defective platelet aggregation. Four mutations in the CISD2 gene have been reported. Among these mutations, the homozygous c.103 + 1G > A substitution was identified in the donor splice site of intron 1 in two Italian sisters and was predicted to cause a exon 1 to be skipped.

          Methods

          Here, we employed molecular assays to characterize the c.103 + 1G > A mutation using the patient’s peripheral blood mononuclear cells (PBMCs). 5′-RACE coupled with RT-PCR were used to analyse the effect of the c.103 + 1G > A mutation on mRNA splicing. Western blot analysis was used to analyse the consequences of the CISD2 mutation on the encoded protein.

          Results

          We demonstrated that the c.103 + 1G > A mutation functionally impaired mRNA splicing, producing multiple splice variants characterized by the whole or partial absence of exon 1, which introduced amino acid changes and a premature stop. The affected mRNAs resulted in either predicted targets for nonsense mRNA decay (NMD) or non-functional isoforms.

          Conclusions

          We concluded that the c.103 + 1G > A mutation resulted in the loss of functional CISD2 protein in the two Italian WFS2 patients.

          Electronic supplementary material

          The online version of this article (10.1186/s12881-017-0508-2) contains supplementary material, which is available to authorized users.

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          Most cited references14

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          NMD: a multifaceted response to premature translational termination.

          Although most mRNA molecules derived from protein-coding genes are destined to be translated into functional polypeptides, some are eliminated by cellular quality control pathways that collectively perform the task of mRNA surveillance. In the nonsense-mediated decay (NMD) pathway premature translation termination promotes the recruitment of a set of factors that destabilize a targeted mRNA. The same factors also seem to have key roles in repressing the translation of the mRNA, dissociating its terminating ribosome and messenger ribonucleoproteins (mRNPs), promoting the degradation of its truncated polypeptide product and possibly even feeding back to the site of transcription to interfere with splicing of the primary transcript.
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            NAF-1 and mitoNEET are central to human breast cancer proliferation by maintaining mitochondrial homeostasis and promoting tumor growth.

            Mitochondria are emerging as important players in the transformation process of cells, maintaining the biosynthetic and energetic capacities of cancer cells and serving as one of the primary sites of apoptosis and autophagy regulation. Although several avenues of cancer therapy have focused on mitochondria, progress in developing mitochondria-targeting anticancer drugs nonetheless has been slow, owing to the limited number of known mitochondrial target proteins that link metabolism with autophagy or cell death. Recent studies have demonstrated that two members of the newly discovered family of NEET proteins, NAF-1 (CISD2) and mitoNEET (mNT; CISD1), could play such a role in cancer cells. NAF-1 was shown to be a key player in regulating autophagy, and mNT was proposed to mediate iron and reactive oxygen homeostasis in mitochondria. Here we show that the protein levels of NAF-1 and mNT are elevated in human epithelial breast cancer cells, and that suppressing the level of these proteins using shRNA results in significantly reduced cell proliferation and tumor growth, decreased mitochondrial performance, uncontrolled accumulation of iron and reactive oxygen in mitochondria, and activation of autophagy. Our findings highlight NEET proteins as promising mitochondrial targets for cancer therapy.
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              A homozygous mutation in a novel zinc-finger protein, ERIS, is responsible for Wolfram syndrome 2.

              A single missense mutation was identified in a novel, highly conserved zinc-finger gene, ZCD2, in three consanguineous families of Jordanian descent with Wolfram syndrome (WFS). It had been shown that these families did not have mutations in the WFS1 gene (WFS1) but were mapped to the WFS2 locus at 4q22-25. A G-->C transversion at nucleotide 109 predicts an amino acid change from glutamic acid to glutamine (E37Q). Although the amino acid is conserved and the mutation is nonsynonymous, the pathogenesis for the disorder is because the mutation also causes aberrant splicing. The mutation was found to disrupt messenger RNA splicing by eliminating exon 2, and it results in the introduction of a premature stop codon. Mutations in WFS1 have also been found to cause low-frequency nonsyndromic hearing loss, progressive hearing loss, and isolated optic atrophy associated with hearing loss. Screening of 377 probands with hearing loss did not identify mutations in the WFS2 gene. The WFS1-encoded protein, Wolframin, is known to localize to the endoplasmic reticulum and plays a role in calcium homeostasis. The ZCD2-encoded protein, ERIS (endoplasmic reticulum intermembrane small protein), is also shown to localize to the endoplasmic reticulum but does not interact directly with Wolframin. Lymphoblastoid cells from affected individuals show a significantly greater rise in intracellular calcium when stimulated with thapsigargin, compared with controls, although no difference was observed in resting concentrations of intracellular calcium.
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                Author and article information

                Contributors
                monica.cattaneo@multimedica.it
                lucia.lasala@multimedica.it
                maurizio.rondinelli@cardiologicomonzino.it
                edoardo.errichiello01@universitadipavia.it
                orsetta.zuffardi@unipv.it
                annibale.puca@multimedica.it
                stefano.genovese@cardiologicomonzino.it
                antonio.ceriello@multimedica.it
                Journal
                BMC Med Genet
                BMC Med. Genet
                BMC Medical Genetics
                BioMed Central (London )
                1471-2350
                13 December 2017
                13 December 2017
                2017
                : 18
                : 147
                Affiliations
                [1 ]ISNI 0000 0004 1784 7240, GRID grid.420421.1, Cardiovascular Research Unit, IRCCS MultiMedica, ; Via G. Fantoli 16/15, 20138 Milan, Italy
                [2 ]ISNI 0000 0004 1784 7240, GRID grid.420421.1, Diabetes Endocrine and Metabolic Diseases Unit, IRCCS MultiMedica, ; 20099 Sesto San Giovanni, Milan, Italy
                [3 ]ISNI 0000 0004 1762 5736, GRID grid.8982.b, Department of Molecular Medicine, , University of Pavia, ; 27100 Pavia, Italy
                [4 ]ISNI 0000 0004 1937 0335, GRID grid.11780.3f, Department of Medicine and Surgery, , University of Salerno, ; 84084 Salerno, Italy
                [5 ]ISNI 0000 0004 1937 0247, GRID grid.5841.8, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS) and Centro de Investigación Biomedica en Red de Diabetes y Enfermedades Metabólicas Asociadas (CIBERDEM), ; Barcelona, Spain
                [6 ]IRCCS Centro Cardiologico Monzino Diabetes, Endocrine and Metabolic Diseases Unit, 20138 Milan, Italy
                Author information
                http://orcid.org/0000-0002-1866-5866
                Article
                508
                10.1186/s12881-017-0508-2
                5729406
                29237418
                613cac0c-6562-4d65-800f-bcc6a0fe8864
                © The Author(s). 2017

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 14 June 2017
                : 29 November 2017
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100003196, Ministero della Salute;
                Award ID: RF-2011-02348194
                Award Recipient :
                Funded by: Fondazione Invernizzi
                Categories
                Research Article
                Custom metadata
                © The Author(s) 2017

                Genetics
                cisd2,wolfram syndrome type 2,mrna splicing,non functional isoforms,nonsense-mediated mrna decay

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