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      Development of PR genes panel for screening aphid-tolerant cultivars in Brassica juncea

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          Abstract

          The exorbitant yield loss incurred by Indian farmers every year (10–90%) in rapeseed–mustard ( Brassica juncea) is chiefly attributed to the progressive infestation of mustard fields by Lipaphis erysimi (Kalt.), a major insect pest belonging to the family of Homoptera. Currently there are no successful tolerant cultivars developed by conventional means in Brassica juncea with systemic plant responses in the form of direct or indirect defenses against aphid attack. Lack of specific methods for screening large numbers of genotypes required in breeding for selection of tolerant cultivars in mustard is one of the main causes of slow progress in developing resistant varieties of Brassica juncea. Traditional phenotype-based breeding has to be augmented with recent molecular approaches for potential genotype selection and cultivar development in Brassica juncea. In current study a pathogen-responsive gene panel was developed which could be used for expression-assisted breeding program in mustard for selection of tolerant types against aphid infestation, minimizing the huge crop losses suffered by farmers every year.

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          The online version of this article (doi:10.1007/s13205-017-0785-7) contains supplementary material, which is available to authorized users.

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          The implications of predicted climate change for insect pests in the UK, with emphasis on non-indigenous species

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            Global insights into high temperature and drought stress regulated genes by RNA-Seq in economically important oilseed crop Brassica juncea

            Background Brassica juncea var. Varuna is an economically important oilseed crop of family Brassicaceae which is vulnerable to abiotic stresses at specific stages in its life cycle. Till date no attempts have been made to elucidate genome-wide changes in its transcriptome against high temperature or drought stress. To gain global insights into genes, transcription factors and kinases regulated by these stresses and to explore information on coding transcripts that are associated with traits of agronomic importance, we utilized a combinatorial approach of next generation sequencing and de-novo assembly to discover B. juncea transcriptome associated with high temperature and drought stresses. Results We constructed and sequenced three transcriptome libraries namely Brassica control (BC), Brassica high temperature stress (BHS) and Brassica drought stress (BDS). More than 180 million purity filtered reads were generated which were processed through quality parameters and high quality reads were assembled de-novo using SOAPdenovo assembler. A total of 77750 unique transcripts were identified out of which 69,245 (89%) were annotated with high confidence. We established a subset of 19110 transcripts, which were differentially regulated by either high temperature and/or drought stress. Furthermore, 886 and 2834 transcripts that code for transcription factors and kinases, respectively, were also identified. Many of these were responsive to high temperature, drought or both stresses. Maximum number of up-regulated transcription factors in high temperature and drought stress belonged to heat shock factors (HSFs) and dehydration responsive element-binding (DREB) families, respectively. We also identified 239 metabolic pathways, which were perturbed during high temperature and drought treatments. Analysis of gene ontologies associated with differentially regulated genes forecasted their involvement in diverse biological processes. Conclusions Our study provides first comprehensive discovery of B. juncea transcriptome under high temperature and drought stress conditions. Transcriptome resource generated in this study will enhance our understanding on the molecular mechanisms involved in defining the response of B. juncea against two important abiotic stresses. Furthermore this information would benefit designing of efficient crop improvement strategies for tolerance against conditions of high temperature regimes and water scarcity. Electronic supplementary material The online version of this article (doi:10.1186/s12870-014-0405-1) contains supplementary material, which is available to authorized users.
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              Defence mechanisms of Brassicaceae: implications for plant-insect interactions and potential for integrated pest management. A review

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                Author and article information

                Contributors
                917923260063 , rsandeepraj@gmail.com , sandeep@gujaratgenomics.in
                Journal
                3 Biotech
                3 Biotech
                3 Biotech
                Springer Berlin Heidelberg (Berlin/Heidelberg )
                2190-572X
                2190-5738
                1 June 2017
                1 June 2017
                June 2017
                : 7
                : 2
                : 129
                Affiliations
                Department of Science and Technology, Government of Gujarat, Gujarat State Biotechnology Mission, 11th Block, 9th Floor, Udyog Bhavan, Gandhinagar, 382 011 Gujarat India
                Article
                785
                10.1007/s13205-017-0785-7
                5453914
                28573399
                603265b0-05d8-47a0-91fb-a5d1034f0145
                © Springer-Verlag Berlin Heidelberg 2017
                History
                : 16 November 2016
                : 21 March 2017
                Categories
                Original Article
                Custom metadata
                © Springer-Verlag GmbH Germany 2017

                brassica juncea,lipaphis erysimi,pathogen-responsive genes,gene expression

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