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      Metagenomic signatures reveal the key role of phloretin in amelioration of gut dysbiosis attributed to metabolic dysfunction-associated fatty liver disease by time-dependent modulation of gut microbiome

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          Abstract

          The importance of gut-liver axis in the pathophysiology of metabolic dysfunction-associated fatty liver disease (MAFLD) is being investigated more closely in recent times. However, the inevitable changes in gut microbiota during progression of the disease merits closer look. The present work intends to assess the time-dependent gut dysbiosis in MAFLD, its implications in disease progression and role of plant-derived prebiotics in its attenuation. Male C57BL/6J mice were given western diet (WD) for up to 16 weeks and phloretin was administered orally. The fecal samples of mice were collected every fourth week for 16 weeks. The animals were sacrificed at the end of the study and biochemical and histological analyses were performed. Further, 16S rRNA amplicon sequencing analysis was performed to investigate longitudinal modification of gut microbiome at different time points. Findings of our study corroborate that phloretin alleviated the metabolic changes and mitigated circulating inflammatory cytokines levels. Phloretin treatment resists WD induced changes in microbial diversity of mice and decreased endotoxin content. Prolonged exposure of WD changed dynamics of gut microbiota abundance and distribution. Increased abundance of pathogenic taxa like Desulfovibrionaceae, Peptostreptococcus, Clostridium, and Terrisporobacter was noted. Phloretin treatment not only reversed this dysbiosis but also modulated taxonomic signatures of beneficial microbes like Ruminococcus, Lactobacillus, and Alloprevotella. Therefore, the potential of phloretin to restore gut eubiosis could be utilized as an intervention strategy for the prevention of MAFLD and related metabolic disorders.

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            We present DADA2, a software package that models and corrects Illumina-sequenced amplicon errors. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. In several mock communities DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                07 September 2023
                2023
                : 14
                : 1210517
                Affiliations
                [1] 1Pharmacology and Toxicology Laboratory, Dietetics and Nutrition Technology Division, CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT) , Palampur, India
                [2] 2Academy of Scientific and Innovative Research (AcSIR) , Ghaziabad, India
                [3] 3INtegrative GENomics of HOst-PathogEn (INGEN-HOPE) Laboratory, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB) , New Delhi, India
                [4] 4Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT) , Palampur, India
                Author notes

                Edited by: Ekaterina Avershina, Oslo University Hospital, Norway

                Reviewed by: Naga Betrapally, National Cancer Institute (NIH), United States; Ruiyue Yang, Peking University, China

                *Correspondence: Yogendra Padwad, yogendra@ 123456ihbt.res.in

                ORCID: Jyoti Chhimwal, orcid.org/0000-0002-6155-7721; Prince Anand, orcid.org/0000-0003-3004-5923; Priyanka Mehta, orcid.org/0000-0001-6298-4322; Mohit Kumar Swarnkar, orcid.org/0000-0002-7033-2364; Vikram Patial, orcid.org/0000-0002-4912-9871; Rajesh Pandey, orcid.org/0000-0002-4404-8327; Yogendra Padwad, orcid.org/0000-0003-1793-9340

                Article
                10.3389/fmicb.2023.1210517
                10516607
                37744933
                601b01cb-8831-4a83-8d04-d772435f23cb
                Copyright © 2023 Chhimwal, Anand, Mehta, Swarnkar, Patial, Pandey and Padwad.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 26 April 2023
                : 21 August 2023
                Page count
                Figures: 8, Tables: 0, Equations: 0, References: 71, Pages: 18, Words: 11984
                Funding
                The Council of Scientific and Industrial Research (CSIR) of India funded this research through project ID MLP0204 and MLP0155.
                Categories
                Microbiology
                Original Research
                Custom metadata
                Microorganisms in Vertebrate Digestive Systems

                Microbiology & Virology
                gut microbiome,mafld,phloretin,16s rrna,metagenome
                Microbiology & Virology
                gut microbiome, mafld, phloretin, 16s rrna, metagenome

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