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      CRISPR/Cas9 Gene Editing of Gluten in Wheat to Reduce Gluten Content and Exposure—Reviewing Methods to Screen for Coeliac Safety

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          Abstract

          Ingestion of gluten proteins (gliadins and glutenins) from wheat, barley and rye can cause coeliac disease (CD) in genetically predisposed individuals. The only remedy is a strict and lifelong gluten-free diet. There is a growing desire for coeliac-safe, whole-grain wheat-based products, as consumption of whole-grain foods reduces the risk of chronic diseases. However, due to the large number of gluten genes and the complexity of the wheat genome, wheat that is coeliac-safe but retains baking quality cannot be produced by conventional breeding alone. CD is triggered by immunogenic epitopes, notably those present in α-, γ-, and ω-gliadins. RNA interference (RNAi) silencing has been used to down-regulate gliadin families. Recently, targeted gene editing using CRISPR/Cas9 has been applied to gliadins. These methods produce offspring with silenced, deleted, and/or edited gliadins, that overall may reduce the exposure of patients to CD epitopes. Here we review methods to efficiently screen and select the lines from gliadin gene editing programs for CD epitopes at the DNA and protein level, for baking quality, and ultimately in clinical trials. The application of gene editing for the production of coeliac-safe wheat is further considered within the context of food production and in view of current national and international regulatory frameworks.

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          Precise base editing in rice, wheat and maize with a Cas9- cytidine deaminase fusion

          Single DNA base pairs are edited in wheat, rice and maize using a Cas9 nickase fusion protein.
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            Prime genome editing in rice and wheat

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              Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice

              The Cas9/sgRNA of the CRISPR/Cas system has emerged as a robust technology for targeted gene editing in various organisms, including plants, where Cas9/sgRNA-mediated small deletions/insertions at single cleavage sites have been reported in transient and stable transformations, although genetic transmission of edits has been reported only in Arabidopsis and rice. Large chromosomal excision between two remote nuclease-targeted loci has been reported only in a few non-plant species. Here we report in rice Cas9/sgRNA-induced large chromosomal segment deletions, the inheritance of genome edits in multiple generations and construction of a set of facile vectors for high-efficiency, multiplex gene targeting. Four sugar efflux transporter genes were modified in rice at high efficiency; the most efficient system yielding 87–100% editing in T0 transgenic plants, all with di-allelic edits. Furthermore, genetic crosses segregating Cas9/sgRNA transgenes away from edited genes yielded several genome-edited but transgene-free rice plants. We also demonstrated proof-of-efficiency of Cas9/sgRNAs in producing large chromosomal deletions (115–245 kb) involving three different clusters of genes in rice protoplasts and verification of deletions of two clusters in regenerated T0 generation plants. Together, these data demonstrate the power of our Cas9/sgRNA platform for targeted gene/genome editing in rice and other crops, enabling both basic research and agricultural applications.
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                Author and article information

                Contributors
                Journal
                Front Nutr
                Front Nutr
                Front. Nutr.
                Frontiers in Nutrition
                Frontiers Media S.A.
                2296-861X
                24 April 2020
                2020
                : 7
                : 51
                Affiliations
                [1] 1Plant Breeding, Wageningen University and Research , Wageningen, Netherlands
                [2] 2John Bingham Laboratory, NIAB , Cambridge, United Kingdom
                [3] 3Bioscience, Wageningen University and Research , Wageningen, Netherlands
                Author notes

                Edited by: Carmen Gianfrani, Institute of Biochemistry and Cell Biology (CNR), Italy

                Reviewed by: Francisco Barro, Spanish National Research Council, Spain; Nicolò Merendino, University of Tuscia, Italy

                *Correspondence: Marinus J. M. Smulders rene.smulders@ 123456wur.nl

                This article was submitted to Nutritional Immunology, a section of the journal Frontiers in Nutrition

                Article
                10.3389/fnut.2020.00051
                7193451
                32391373
                5f3a5be6-7649-497f-af92-37f601049dea
                Copyright © 2020 Jouanin, Gilissen, Schaart, Leigh, Cockram, Wallington, Boyd, van den Broeck, van der Meer, America, Visser and Smulders.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 01 February 2020
                : 30 March 2020
                Page count
                Figures: 2, Tables: 1, Equations: 0, References: 113, Pages: 15, Words: 12066
                Funding
                Funded by: European Commission 10.13039/501100000780
                Funded by: Biotechnology and Biological Sciences Research Council 10.13039/501100000268
                Categories
                Nutrition
                Review

                gliadin,coeliac disease,ddpcr,lc-msms,enrichment,glutenseq,t cell epitope

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